Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30601
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 107 2e-24
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 34 0.020
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 33 0.034
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 32 0.10
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 31 0.14
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 30 0.32
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 30 0.32
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.32
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.42
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 29 0.56
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.98
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.3
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 28 1.7
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.0
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 27 3.0
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 5.2
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.2
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 5.2
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 26 6.9
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 6.9
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 6.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 6.9
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 6.9
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 25 9.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.1
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 25 9.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.1
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 9.1
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 107 bits (257), Expect = 2e-24
Identities = 58/190 (30%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Frame = +3
Query: 81 SVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGEN 260
S A EKPAE + + ++E ++ L ++ + ++ ++ +++LAD N
Sbjct: 31 STEAAKEEKPAEEKVAETENVDVKELQSKLSELKSKYEAKDKEVAELKGSIRQSLADYRN 90
Query: 261 VRKRMLKQVEDAKSFAIQSFCKDLLEVADTLTXXXXXXXXXXXXXXXXXX-LRALHDGVR 437
+ RM + +E ++FA+Q KDLL+ D L L L++G+
Sbjct: 91 LENRMKRDMEQTRAFAVQKLTKDLLDSVDNLERALSIVPEEKRNNRESNKDLVDLYEGLA 150
Query: 438 LTRAQLGQVFARHGLVPVSPLREKFDPNLHEALFQQEVEGAESGTVVAVSKVGYKLHERC 617
+T + L + ++GLV + E FDPN+HEA+FQ VEG + TV G++L+ R
Sbjct: 151 MTESNLMKTLGKYGLVRYDGIGEDFDPNIHEAVFQIPVEGKKPNTVFHCESKGFQLNGRV 210
Query: 618 VRPALVGVAK 647
+RPA VGV K
Sbjct: 211 IRPAKVGVVK 220
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/64 (23%), Positives = 39/64 (60%)
Frame = +3
Query: 114 ESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVED 293
++ N +L A ++EC I+SLT E+ + +E+ +++D + + + + + + +L +V D
Sbjct: 1108 QATKNKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYI-ELQEIHENLLLKVSD 1166
Query: 294 AKSF 305
+++
Sbjct: 1167 LENY 1170
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 33.5 bits (73), Expect = 0.034
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 102 EKPAESESNDKLPA-TIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRML 278
E+PA++E+++K+P+ IE Q+ +E ++ N I +K +R +D +R+
Sbjct: 103 ERPAKAENDEKVPSDAIEALETQLTQQKSEKHN-SSVINFIYEKNERLWSDPFVSSQRLR 161
Query: 279 KQVEDAKSFAIQSFCKDL 332
KQ + K + KDL
Sbjct: 162 KQFRERKKIEKKQEAKDL 179
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 123 SNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKR 239
SN KL ++E +++E+ T E+N IK + + +D++KR
Sbjct: 162 SNTKLKDSMETMKRRMETETKEMNKIKPKNDSESDRFKR 200
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 105 KPAESESNDKLPAT-IEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLK 281
K ES +D + A+ + ++ E L+ + S++EQ+ I YK L D E+ R+
Sbjct: 349 KLGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGN 408
Query: 282 QVED 293
++ +
Sbjct: 409 KISE 412
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 168 IESLTNEVNSIKEQFNDINDKYKRALADGENVRKR 272
+ LTNE+ +K+++ ++D+Y +L G + KR
Sbjct: 716 VNQLTNELMELKKRYEKLSDRY-NSLTPGYHKHKR 749
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.32
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 48 RPNLTIKTFRPSVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNS-----IKEQF 212
+ N+ I + LS + ES D L + +QIES NEVNS ++F
Sbjct: 496 KANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEF 555
Query: 213 NDINDKYKRALAD 251
+ +Y++ L +
Sbjct: 556 ETLKTQYEKNLCN 568
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 30.3 bits (65), Expect = 0.32
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 54 NLTIKTFRPSVRALSAEKPAESESNDKLPAT-----IEECHKQIESLTNEVNSIKEQFND 218
N +K+ + A + E+ + S D LP T +E H + + +E+N +K Q N+
Sbjct: 174 NSDLKSIKQDSSAAAIEELVQQISPD-LPRTELLKILEAKHPEFQLFLDELNQLKPQLNE 232
Query: 219 INDKYK 236
I +K K
Sbjct: 233 IKEKLK 238
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +3
Query: 93 LSAEKPAE--SESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVR 266
L++EK E +E++++ +E +I + ++ S++ + D+N + + + E+
Sbjct: 974 LASEKTLEMMNETHEQFKHLVES---EISTREEKITSLRSELLDLNKRVEVLKEEKESSS 1030
Query: 267 KRMLKQVEDA--KSFAIQSFCKD 329
K + KQ+EDA + + SF KD
Sbjct: 1031 KELAKQLEDAVREKDSALSFKKD 1053
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.9 bits (64), Expect = 0.42
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +3
Query: 36 DTTLRPNLTIKTFRPSVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFN 215
D +P+ IK +V + S+ D+L ++ H E ++ +KE+ N
Sbjct: 119 DKAAKPDGEIKK---NVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERIN 175
Query: 216 DINDKYK--RALADGENVRKRMLKQVEDA 296
D+ Y+ +A AD ++ ++ + E A
Sbjct: 176 DLTYDYETLKANADDSEGKQTLVSKREAA 204
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 132 KLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKS 302
K A +EE ++ NE+N + + N D K+ D EN R+LK E KS
Sbjct: 200 KREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLEN---RLLKVEEHEKS 253
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 147 IEECHKQIESLTNEVNSIKEQFND--INDKYKRALADGENVRKRMLKQVEDAKSFAIQ 314
+EECHK E N+IK + D+ +A + EN R R E+ K I+
Sbjct: 20 LEECHKSFGKFFGECNTIKYELKACLTKDRNDKARLNRENARMRKKVIEENRKKEEIE 77
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.7 bits (61), Expect = 0.98
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 93 LSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKR 239
++AE+ + +KL A EE +++ S V +KE+ ND+ K R
Sbjct: 235 INAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYR 283
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +3
Query: 81 SVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGEN 260
SV+ + +KP+ + +N+ + Q+E+L N++ + +F + +R LA+ E+
Sbjct: 35 SVKKPNLKKPSVNSANETKNPKLASLEFQLENLKNDLKRKELEFEREQIELQRKLAE-EH 93
Query: 261 VRKRMLK 281
+K L+
Sbjct: 94 EQKNSLQ 100
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 162 KQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQS 317
K+ + N IKE I DK+K AL+D +NV K D IQ+
Sbjct: 3110 KEKSRIENGFKKIKETSQGI-DKFKEALSDQQNVLFSKTKTANDRLQCIIQT 3160
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 81 SVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGEN 260
+V + S PA +++ ++ P T+E + + LTN++ K+ +I D Y L D
Sbjct: 55 NVDSSSVAYPAWNQAGEEAPVTMEGVQEILLDLTNKLGFQKDNMRNIFD-YVMVLLDSRA 113
Query: 261 VR 266
R
Sbjct: 114 SR 115
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Frame = +3
Query: 168 IESLTNEVNSIKEQFND-----INDKYKRALADGENVRKR 272
I+++ NE+N +++Q ND ++DK+ ++ + VRK+
Sbjct: 157 IDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQ 196
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 114 ESESNDKLPATIEECHKQIESLTNEVNSIKEQFN-DINDKYKRALADGENVRKRMLKQVE 290
++ S++ +P H Q +EV+S++ QFN D + EN+ + Q
Sbjct: 301 DANSSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQAN 360
Query: 291 DAKS 302
+S
Sbjct: 361 GIES 364
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +3
Query: 135 LPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKSFAIQ 314
LP+ IE+ +TN + S+KE + + D +K + R A +
Sbjct: 294 LPSIIEKQPSGFTLITNPIKSLKEFYKGVRDGFKTQYEQLQKDVSRRAVATTSASTIRPN 353
Query: 315 SFCKDLLEV 341
S K L E+
Sbjct: 354 SHYKKLKEL 362
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 614 MRQTSFGWGGEINVKTKKNK*NSQFNPNHHHSSVWTGLIVVE 739
M + FG +++ K K+++ S+ N + + SSV G +++E
Sbjct: 216 MPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILE 257
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 84 VRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKE 206
++ L E ++E+ +L IEE H+++ SL E SIKE
Sbjct: 500 MKKLQDENSEKTETIAQLEQIIEELHEELRSLEEE--SIKE 538
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +3
Query: 57 LTIKTFRPSVRALSAEKPAESESNDKLPATIEECHKQIE------SLTNEVNSIKEQFND 218
LT T P +S ESE +DK ++ H E SL++ + S+ E+ +
Sbjct: 52 LTASTTLPENFVISFTNSIESEESDKSDYLLDHAHSLQELSTTHSSLSSTLTSMSEESSS 111
Query: 219 INDKYKRALADGEN 260
K+ L DG N
Sbjct: 112 TESKF-ATLNDGIN 124
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 120 ESNDKLPATIEECHKQIESLTNEVNSIKEQFN----DINDK 230
+++ + AT+EE K E L N I++ FN +NDK
Sbjct: 187 DASRPISATVEETSKLYEVLAQVENGIQQSFNVELSSLNDK 227
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 298 LASSTCFNILFRTFSPSANALLYLSLMSLNCSLIELTSLVK 176
L+SS C +PS N+ Y +L +CS+++L SLV+
Sbjct: 256 LSSSLCDAQELYIMNPS-NSYTYANLRFSDCSILQLHSLVE 295
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 108 PAESESNDKLPATIEECHKQIESLTNEVNSIKEQ 209
P+E S + +EE K + +T E+N +++Q
Sbjct: 21 PSEQTSRSEKETWLEEKSKYLGEMTRELNEVQDQ 54
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 162 KQIESLTNEVNSIKEQFNDINDKYKRALADGENVRKRMLKQVEDAKS 302
+++E LT+E+ + E++ND ++ + + + K ED+ S
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTS 645
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -3
Query: 746 PTLQQLSDRSRQKNGDGLD*IENFICFFLFLHLFRHPNQSWSDASLV 606
PTL+Q D ++ + +E+ C++ L +R+ +Q++ DA+ +
Sbjct: 993 PTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1039
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 507 KFDPNLHEALFQQEVEGAESGTVVAVSKVG 596
KFDPN + +F + V G +G K+G
Sbjct: 4 KFDPNEVKTIFMRAVGGEVAGGSTLAPKIG 33
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Frame = +3
Query: 123 SNDKLPATIEECHKQIE-------SLTNEVNSIKEQFNDINDKYKRA 242
++D PA++E C KQ++ +E+ S+ ++F +I+++ A
Sbjct: 803 TSDVSPASVETCDKQVQLEDTRYRQHLSELESLNQRFTEISERIPSA 849
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 507 KFDPNLHEALFQQEVEGAESGTVVAVSKVG 596
KFDPN + +F + V G +G K+G
Sbjct: 4 KFDPNEVKTIFMRAVGGEVAGGSTLAPKIG 33
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/60 (21%), Positives = 31/60 (51%)
Frame = +3
Query: 66 KTFRPSVRALSAEKPAESESNDKLPATIEECHKQIESLTNEVNSIKEQFNDINDKYKRAL 245
++FR ++ L ++ A N + + EC + S+T + + +F D +++++R L
Sbjct: 1038 ESFRERMQILKSKYGA---LNAERAGLLGECKQLENSITKDKEELNMEFKDADERFRRQL 1094
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 127 FDSDSAGFSALSARTDGLKVLIVRFGLSVVSAKYF 23
+DS SA SA R + L + VRF +SV+ A++F
Sbjct: 672 YDSVSASISARIKRQNSLNLKPVRFRISVL-AEFF 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,237
Number of Sequences: 5004
Number of extensions: 51668
Number of successful extensions: 209
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -