Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30599
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 30 0.28
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.66
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.66
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 28 1.5
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.0
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.0
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 27 3.5
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 3.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 3.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 6.1
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 6.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 6.1
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 26 6.1
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 8.1
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 8.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 8.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.1
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = +2
Query: 362 NDNLYCLNLNSELTLISNPDKEKMDFWEKI-------------YDKHYRIWDETTNQSKN 502
N +L ++L S+L I P+K + + WE YD +++ T+ S
Sbjct: 204 NLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFSLE 263
Query: 503 EPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNE 613
E + D + PE YQNE I+ + ++KN+
Sbjct: 264 EIEKDLGRSLPEYPAYQNEEGINALRNVLVAFSWKNQ 300
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 705 TLVSLFMTWVMTTVSITDTISGSCLGVSISGSFLYVSISVSFL 577
TL S + W+M V+I D + +C G+ L+ + + FL
Sbjct: 66 TLSSSYYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMGIKFL 108
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 486 PTSLKTNHKSIHSKKNQKSIHTKMNQKSIHA 578
P K +H S S ++ KS+ T NQK IH+
Sbjct: 856 PMKKKLSHSSASSTRSIKSLLTNANQKHIHS 886
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +2
Query: 380 LNLNSELTLISNPDKEKMDFWEKIYDKHYRIWDETT---NQSKNEPQIDTF----KKEPE 538
LN +SE I+ +K+ D H ++TT + NE ++D KKE E
Sbjct: 43 LNDDSEAAKITTNEKQSSPV-----DSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDE 97
Query: 539 IDTYQNEPEIDTCKKETEIDTYKNEPEID 625
+ +NE E D ++E E + E E D
Sbjct: 98 DNVEENEEEADANEEEEEDEEDDEEDEED 126
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Frame = +2
Query: 95 RPIYYYRFDY---VGELNIAQKIFFSLGLKYAMHMDELGYL----FKNDFQKDVEPTPED 253
+PIY DY G+LN A + + + Y + +L K+D +++ T E
Sbjct: 545 KPIYQKWLDYESNYGDLNAAIALSQRMAVVYPQESTQAIFLSRYGLKDDAEEEERETKEA 604
Query: 254 IKMRERIVRLWTNFAKSGNPIPDENH 331
K+RE VRL GN P H
Sbjct: 605 EKIRELSVRL-----NGGNGFPGHVH 625
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = -2
Query: 313 RVPRFSEISPEP---DNPL---THLDIFRSRL-HVFLEVILEQIAQLVHVHSVLQSKTKE 155
R+P F EI +PL +H+D+ S + H+F + ++ L+HVH +
Sbjct: 676 RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGK 735
Query: 154 DLLGDIQFAHIIKSIVINWTVRNLEQIFY 68
D+QF + I + T + Y
Sbjct: 736 RKTQDVQFYREVSDIQFDETGNKKRKYMY 764
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 492 SLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNR 644
S +T SI S Q +I + HA+ + HT+ Q+SI ++ R
Sbjct: 718 SRQTTSSSIDSNNVQSNIEFLKGLNATHARSTSQVSHTQRLQQSISTSLER 768
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 476 DETTNQSKNEPQIDTFKK-EPEIDTYQNEPEIDTCKKETEIDTYKN-EPEIDTPK 634
D + + E QID + + N+ E+DT E E T+K+ E ++ +PK
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQMEGNDKELDTDNNEDESTTFKDEEDDLISPK 150
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 62 RYIKYLLQVTNRPIYYYRFDYVGELNIAQKIFFSLGLKYAMHMDELGYLFKNDFQKDVEP 241
RY+K+L V N Y Y+F + I LKY +DEL +K + Q D P
Sbjct: 191 RYLKHLKSVPNVSYYIYKFPF----KILADKSLEDNLKY---LDELDENYKKECQVD-NP 242
Query: 242 TP 247
P
Sbjct: 243 QP 244
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 3.5
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Frame = +2
Query: 2 ESLPEYFHLLSDKLINLDT-HRYIKYLLQVTNRPIYYYRFDYVGELNIAQKIFFSLGLKY 178
+SL E+F +LSD + NL H + LL + Y + V + ++ +I SL +
Sbjct: 902 KSLNEHFIMLSDSMANLQVEHENMSALLL---KEKMYLKNQTVEQASLKSEI-ASLNSQL 957
Query: 179 AMHMDELGYLFKNDFQ----KDVEPTPEDIKMRERIVRLWTNFA--KSGNPIPDENHYL 337
A E+ F+ D + +++E E + + I R A K + DE+H +
Sbjct: 958 AKQKSEIEQAFQGDMEAIIAENLEIMVESQSLEDEIFRKEKQLAETKVNLAVLDEDHMM 1016
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +3
Query: 411 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQ 590
++R ++ ++ +++ + +K P + K + +K++K K+N+ S+H K
Sbjct: 933 RSRGDKKVVDNKRDASDSEDLAIKNPMNKKAKVGKVDFRKHEK----KLNKASMHRDKFS 988
Query: 591 KSIHT 605
+HT
Sbjct: 989 TGMHT 993
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 272 IVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLI 409
+V+ W N A SGN + D W+ + LY L+S + +I
Sbjct: 1760 LVKTWWNEAASGNNLADLIIQHLARWISSSKSYLYSPLLSSHVEVI 1805
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 483 RPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNRK 647
R TS K + K SKK ++ K K + K HT+ ++ +R ++K
Sbjct: 131 RKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 468 ESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQK-SIHAKKKQKSIHTKMNQKSIRPN 635
ES RP + + I QK + + +K S H K Q + N+ + PN
Sbjct: 226 ESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPN 282
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 401 TLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPE-IDTYQNEPEIDTC 577
T+ S+P K +W Y+K I T + K ++ +PE + + ++ +
Sbjct: 146 TINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSA 205
Query: 578 KKETEIDTYKNEPE 619
K T+ ++ +P+
Sbjct: 206 IKATKAFSHLTQPK 219
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 26 LLSDKLINLDTHRYIKYLLQVTNRPIYYYRFDYVGELNIAQKIFFSLGLKYAMHMDEL 199
L + KL + + + Y+ +T I YY++ + ++ AQ++ +LGLK D++
Sbjct: 870 LKNPKLSSSNVYDYLPAFRLLTK--IEYYKYQSLRSIDKAQELLSNLGLKLKEPTDDV 925
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 467 RIW-DETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNEPEI 622
+ W D N++K I +DTY N+ E D KK I T N+ ++
Sbjct: 12 KYWKDVVQNKNKFLKNIGIISGPKLVDTYSNQFEADFLKKCVLIPTSYNKEDL 64
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 254 IKMRERIVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYC 379
IK E I+R TN +K P +N YLN L + +L C
Sbjct: 247 IKYLEHILRTNTNGSKIFTKSPVKNLYLNWPQLVLDYGSLLC 288
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 203 YLFKNDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHYLNTNWL 352
YLF+ +++K + RE++ W +AK P P + WL
Sbjct: 101 YLFE-EYKKQQGTNKSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWL 149
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 608 FCMYRFLFLFCMYRFLVHFGM 546
FC+ F FLF ++ F +HF +
Sbjct: 288 FCLIFFPFLFFLFWFYMHFNI 308
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 455 DKHYRIWDETTNQSKN 502
DK RIWD T+N+ K+
Sbjct: 242 DKTIRIWDSTSNKKKS 257
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 443 EKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCKK---ETEID 598
E +Y Y +W + ++QSK + + +++ E D + + +T K ET +D
Sbjct: 1094 ENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTDIKFFSETTLD 1148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,319
Number of Sequences: 5004
Number of extensions: 72182
Number of successful extensions: 324
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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