Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30598
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    66   4e-12
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    51   2e-07
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    28   1.2  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   8.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   8.6  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   8.6  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   8.6  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 26/55 (47%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = +1

Query: 574 ASQKQVLVPIRLDMEIEGQ-KLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTF 735
           A ++ V +PIRLD+E+    +L+DTF WN NE ++TP+ FA++LC DL+L+T+ +
Sbjct: 111 AEERDVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTNVY 165



 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 583 KQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELN 723
           +++LV   + +++      D   WN   S +TPE+F+ + C+DL L+
Sbjct: 192 QEMLVVFNIQVQLAQLSYNDQVEWNLT-SPLTPEEFSVLTCNDLGLS 237


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/43 (48%), Positives = 32/43 (74%)
 Frame = +1

Query: 592 LVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
           LVPIRL+++ +  KLRD+FTWN  +  I+ +QFAE +C D ++
Sbjct: 141 LVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDI 183



 Score = 33.9 bits (74), Expect = 0.025
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 580 QKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELN 723
           Q  + + I+LD+ I    L D F WN      + E+FA V+C DL L+
Sbjct: 249 QNDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLS 296


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 684 FWCYY*FIFIPCKCIPEFLTLNLHVQSNRYKHLLLRSIL 568
           +WC +  +  P K I +F T  + +  N  KHL LRSI+
Sbjct: 213 YWCLFEDLEKPLKSI-QFFTGLIDLLDNTNKHLTLRSIV 250


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 367 SVSQELATPRESKSKKPHTPSWLPVMPN 450
           S +Q+++  +++ S K   P+ LP++PN
Sbjct: 115 SSNQDISNDQKAPSFKEQEPATLPILPN 142


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 430 WLPVMPNSSHLDAVPQATPISRSRVH 507
           W P   N+  + ++  ATPI   R+H
Sbjct: 684 WKPAQLNNDSISSMALATPIGAIRIH 709


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 235 TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 414
           T EE  RL+ NGL            K  EV+   +   D   AVS  +   + +  K K+
Sbjct: 133 TLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEKVEKMKR 192


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 418 HTPSWLPVMPNSSHLDAVPQATPISRSRVHNKK 516
           H+P+ L V+ N S L A   +  ISRS+  ++K
Sbjct: 77  HSPTSLCVLENGSVLTANYNSASISRSKAKDEK 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,615
Number of Sequences: 5004
Number of extensions: 68353
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)