Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30598
(743 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC117114-1|AAI17115.1| 376|Homo sapiens SWI/SNF related, matrix... 270 4e-72
AJ011738-1|CAA09759.1| 376|Homo sapiens Ini1b protein. 270 4e-72
AB017523-1|BAC77068.1| 376|Homo sapiens Ini1 protein. 270 4e-72
DQ230988-1|ABB02184.1| 385|Homo sapiens SWI/SNF related, matrix... 264 2e-70
CR456581-1|CAG30467.1| 385|Homo sapiens SMARCB1 protein. 264 2e-70
AJ011737-1|CAA09758.1| 385|Homo sapiens integrase interactor 1a... 264 2e-70
U04847-1|AAA81905.1| 385|Homo sapiens Ini1 protein. 261 2e-69
AK024025-1|BAB14784.1| 394|Homo sapiens protein ( Homo sapiens ... 248 2e-65
Y17118-1|CAA76639.1| 355|Homo sapiens SNF5/INI1 protein protein. 225 2e-58
AY207470-1|AAO59166.1| 80|Homo sapiens integrase interactor 1 ... 52 2e-06
AY207471-1|AAO59167.1| 89|Homo sapiens integrase interactor 1 ... 47 6e-05
AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein. 33 1.4
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein. 30 7.6
AK125203-1|BAC86084.1| 157|Homo sapiens protein ( Homo sapiens ... 30 7.6
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein. 30 7.6
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein. 30 7.6
>BC117114-1|AAI17115.1| 376|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 376
Score = 270 bits (662), Expect = 4e-72
Identities = 132/225 (58%), Positives = 168/225 (74%), Gaps = 5/225 (2%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 I--DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATP-RESKSKKPHTPS 429
+ + G KASEVE+I++GND+KYKAVS+S E T RE K+K+
Sbjct: 64 VASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR--NSQ 121
Query: 430 WLPVMPNSSH-LDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIR 606
W+P +PNSSH LDAVP +T I+R+R+ K RTFPLCFDD D + ENASQ +VLVPIR
Sbjct: 122 WVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIR 181
Query: 607 LDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
LDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 LDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 226
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 243 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 294
>AJ011738-1|CAA09759.1| 376|Homo sapiens Ini1b protein.
Length = 376
Score = 270 bits (662), Expect = 4e-72
Identities = 132/225 (58%), Positives = 168/225 (74%), Gaps = 5/225 (2%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 I--DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATP-RESKSKKPHTPS 429
+ + G KASEVE+I++GND+KYKAVS+S E T RE K+K+
Sbjct: 64 VASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR--NSQ 121
Query: 430 WLPVMPNSSH-LDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIR 606
W+P +PNSSH LDAVP +T I+R+R+ K RTFPLCFDD D + ENASQ +VLVPIR
Sbjct: 122 WVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIR 181
Query: 607 LDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
LDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 LDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 226
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 243 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 294
>AB017523-1|BAC77068.1| 376|Homo sapiens Ini1 protein.
Length = 376
Score = 270 bits (662), Expect = 4e-72
Identities = 132/225 (58%), Positives = 168/225 (74%), Gaps = 5/225 (2%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 I--DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATP-RESKSKKPHTPS 429
+ + G KASEVE+I++GND+KYKAVS+S E T RE K+K+
Sbjct: 64 VASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR--NSQ 121
Query: 430 WLPVMPNSSH-LDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIR 606
W+P +PNSSH LDAVP +T I+R+R+ K RTFPLCFDD D + ENASQ +VLVPIR
Sbjct: 122 WVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIR 181
Query: 607 LDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
LDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 LDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 226
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 243 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 294
>DQ230988-1|ABB02184.1| 385|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 385
Score = 264 bits (647), Expect = 2e-70
Identities = 133/234 (56%), Positives = 170/234 (72%), Gaps = 14/234 (5%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 IDNGLG----PH-------XXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-PRES 402
+ + G P+ KASEVE+I++GND+KYKAVS+S E T RE
Sbjct: 64 VASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQ 123
Query: 403 KSKKPHTPSWLPVMPNSS-HLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENAS 579
K+K+ W+P +PNSS HLDAVP +T I+R+R+ K RTFPLCFDD D + ENAS
Sbjct: 124 KAKR--NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAS 181
Query: 580 QKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
Q +VLVPIRLDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 QPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 235
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 252 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 303
>CR456581-1|CAG30467.1| 385|Homo sapiens SMARCB1 protein.
Length = 385
Score = 264 bits (647), Expect = 2e-70
Identities = 133/234 (56%), Positives = 170/234 (72%), Gaps = 14/234 (5%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 IDNGLG----PH-------XXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-PRES 402
+ + G P+ KASEVE+I++GND+KYKAVS+S E T RE
Sbjct: 64 VASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQ 123
Query: 403 KSKKPHTPSWLPVMPNSS-HLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENAS 579
K+K+ W+P +PNSS HLDAVP +T I+R+R+ K RTFPLCFDD D + ENAS
Sbjct: 124 KAKR--NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAS 181
Query: 580 QKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
Q +VLVPIRLDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 QPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 235
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 252 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 303
>AJ011737-1|CAA09758.1| 385|Homo sapiens integrase interactor 1a
protein (INI1A) protein.
Length = 385
Score = 264 bits (647), Expect = 2e-70
Identities = 133/234 (56%), Positives = 170/234 (72%), Gaps = 14/234 (5%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 IDNGLG----PH-------XXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-PRES 402
+ + G P+ KASEVE+I++GND+KYKAVS+S E T RE
Sbjct: 64 VASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQ 123
Query: 403 KSKKPHTPSWLPVMPNSS-HLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENAS 579
K+K+ W+P +PNSS HLDAVP +T I+R+R+ K RTFPLCFDD D + ENAS
Sbjct: 124 KAKR--NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAS 181
Query: 580 QKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
Q +VLVPIRLDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 QPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 235
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 252 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 303
>U04847-1|AAA81905.1| 385|Homo sapiens Ini1 protein.
Length = 385
Score = 261 bits (639), Expect = 2e-69
Identities = 132/234 (56%), Positives = 169/234 (72%), Gaps = 14/234 (5%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 IDNGLG----PH-------XXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-PRES 402
+ + G P+ KASEVE+I++GND+KYKAVS+S E T RE
Sbjct: 64 VASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQ 123
Query: 403 KSKKPHTPSWLPVMPNSS-HLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENAS 579
K+K+ W+P + NSS HLDAVP +T I+R+R+ K RTFPLCFDD D + ENAS
Sbjct: 124 KAKR--NSQWVPTLSNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAS 181
Query: 580 QKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTSTFIP 741
Q +VLVPIRLDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN TF+P
Sbjct: 182 QPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVP 235
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 252 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 303
>AK024025-1|BAB14784.1| 394|Homo sapiens protein ( Homo sapiens
cDNA FLJ13963 fis, clone Y79AA1001299, highly similar to
Homo sapiens mRNA for integrase interactor 1b protein
(INI1B). ).
Length = 394
Score = 248 bits (607), Expect = 2e-65
Identities = 132/243 (54%), Positives = 167/243 (68%), Gaps = 23/243 (9%)
Frame = +1
Query: 82 MAL-RTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
MAL +T+G KP+ FQ+E+ G+FY +GSEVGNYLR+FRGSLYK+YP + RR T EERK++
Sbjct: 4 MALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKI 63
Query: 259 I--DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-PRESKSKKPHTPS 429
+ + G KASEVE+I++GND+KYKAVS+S E T RE K+K+
Sbjct: 64 VASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR--NSQ 121
Query: 430 WLPVMPNSS-HLDAVPQATPISRSRVHNKKVRTFPL-C-----------------FDDTD 552
W+P +PNSS HLDAVP +T I+R R+ K RTFPL C FDD D
Sbjct: 122 WVPTLPNSSHHLDAVPCSTTINRDRMGRDKKRTFPLWCGCIAALTLRADSALVLHFDDHD 181
Query: 553 MTAMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTST 732
+ ENASQ +VLVPIRLDMEI+GQKLRD FTWN NE ++TPE F+E+LCDDL+LN T
Sbjct: 182 PAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLT 241
Query: 733 FIP 741
F+P
Sbjct: 242 FVP 244
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 261 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 312
>Y17118-1|CAA76639.1| 355|Homo sapiens SNF5/INI1 protein protein.
Length = 355
Score = 225 bits (549), Expect = 2e-58
Identities = 116/206 (56%), Positives = 146/206 (70%), Gaps = 13/206 (6%)
Frame = +1
Query: 163 VGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNGLG----PHXXXXXXXXX------- 309
VGNYLR+FRGSLYK+YP + RR T EERK+++ + G P+
Sbjct: 2 VGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLL 61
Query: 310 KASEVEDIIEGNDDKYKAVSVSQELATP-RESKSKKPHTPSWLPVMPNSSH-LDAVPQAT 483
KASEVE+I++GND+KYKAVS+S E T RE K+K+ W+P + NSSH LDAVP +T
Sbjct: 62 KASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR--NSQWVPTLSNSSHHLDAVPCST 119
Query: 484 PISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKN 663
I+R+R+ K RTFPLCFDD D + ENASQ +VLVPIRLDMEI+GQKLRD FTWN N
Sbjct: 120 TINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMN 179
Query: 664 ESIITPEQFAEVLCDDLELNTSTFIP 741
E ++TPE F+E+LCDDL+LN TF+P
Sbjct: 180 EKLMTPEMFSEILCDDLDLNPLTFVP 205
Score = 37.1 bits (82), Expect = 0.067
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 559 AMLENASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLEL 720
++LE+ S ++V+ I+L++ + L D F W+ +E +PE+FA LC +L L
Sbjct: 222 SILEDQSDQRVI--IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL 273
>AY207470-1|AAO59166.1| 80|Homo sapiens integrase interactor 1
protein isoform D protein.
Length = 80
Score = 52.4 bits (120), Expect = 2e-06
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +1
Query: 223 RRTLTNEERKRLI--DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELAT-P 393
RR T EERK+++ + G KASEVE+I++GND+KYKAVS+S E T
Sbjct: 2 RRLATVEERKKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL 61
Query: 394 RESKSKK 414
RE K+K+
Sbjct: 62 REQKAKR 68
>AY207471-1|AAO59167.1| 89|Homo sapiens integrase interactor 1
protein isoform E protein.
Length = 89
Score = 47.2 bits (107), Expect = 6e-05
Identities = 23/36 (63%), Positives = 30/36 (83%), Gaps = 1/36 (2%)
Frame = +1
Query: 310 KASEVEDIIEGNDDKYKAVSVSQELAT-PRESKSKK 414
KASEVE+I++GND+KYKAVS+S E T RE K+K+
Sbjct: 42 KASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 77
>AY204751-1|AAP13576.1| 5058|Homo sapiens ABC A13 protein.
Length = 5058
Score = 32.7 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 571 NASQKQVLVPIRLDMEIEGQKLRDTFTWNKNESIITPEQFAEVLCDDLELNTS 729
N+S+ VL + +E + L++ TW+KN S++ PE++ + +LE+ S
Sbjct: 536 NSSETSVLNKLLGSVEDADRILQEVITWHKNMSVLIPEEYLD--WQELEMQLS 586
>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
Length = 1481
Score = 30.3 bits (65), Expect = 7.6
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 322 VEDI-IEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATP 486
V+D+ +G D K +++ +E+ TP+E+++ + TP LP + +S +P TP
Sbjct: 492 VKDLKAQGTRDS-KPIALKEEIVTPKETETSEKETPPPLPTI--ASPPPPLPTTTP 544
>AK125203-1|BAC86084.1| 157|Homo sapiens protein ( Homo sapiens
cDNA FLJ43213 fis, clone FEBRA2021339. ).
Length = 157
Score = 30.3 bits (65), Expect = 7.6
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = -3
Query: 651 CKCIPEFLTLNLHVQSNRYKHLLLRSI---LQHCSHVCVIETQWECSHLLIMHST-PADW 484
C CIP+ L L L +S + + ++ R+ L HC H+ + T L+ HS P D
Sbjct: 63 CSCIPDRLPLRLLCESMK-RQIVSRAFYGWLAHCRHLSTVRTHLSA---LVHHSVIPPDR 118
Query: 483 SSLGHSIQMRRVWHDWQP*WSVWLLAF 403
+ + VW +Q V L F
Sbjct: 119 PPGASAGLTKDVWSKYQKDKKVPTLGF 145
>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
Length = 1490
Score = 30.3 bits (65), Expect = 7.6
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 322 VEDI-IEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATP 486
V+D+ +G D K +++ +E+ TP+E+++ + TP LP + +S +P TP
Sbjct: 492 VKDLKAQGTRDS-KPIALKEEIVTPKETETSEKETPPPLPTI--ASPPPPLPTTTP 544
>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
Length = 1535
Score = 30.3 bits (65), Expect = 7.6
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 322 VEDI-IEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATP 486
V+D+ +G D K +++ +E+ TP+E+++ + TP LP + +S +P TP
Sbjct: 546 VKDLKAQGTRDS-KPIALKEEIVTPKETETSEKETPPPLPTI--ASPPPPLPTTTP 598
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,663,136
Number of Sequences: 237096
Number of extensions: 2590910
Number of successful extensions: 6394
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6381
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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