Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30597
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    39   9e-04
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    38   0.001
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    28   1.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   1.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   5.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   6.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.6  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   8.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.7  

>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 357 DYFRFYKVNL-KKECPFWA-DDSRCAMKYCHIKTCTKESVP 473
           DYF +Y+VNL +  CP W  D++ C+ + C +K+  +  +P
Sbjct: 54  DYFSYYRVNLYRSSCPLWENDNAMCSNQGCAVKSLNEIEIP 94


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 3/146 (2%)
 Frame = +3

Query: 315 NVKIFPRIQSIVTK-DYFRFYKVNL-KKECPFWADDS-RCAMKYCHIKTCTKESVPGYET 485
           N ++ P +  +  K DY RFY++NL  KEC +  DD+  C    C++    ++ VP   +
Sbjct: 63  NSRVSPLLFDLTEKSDYMRFYRLNLFNKECRYNLDDNVACGSSACNVLVTDEQDVPEVWS 122

Query: 486 GYNNEYVDETPATKYSKEAQSDCKSDLDHDPQLSYLNMTISAANQYEIAKWKVHDDAHDN 665
             +   + E    + S++     +S ++H  ++S                 ++ D+AH  
Sbjct: 123 SKSLGKL-EGFMPELSRQIVETDRSVMEHVDKIS-----------QSCLLERLDDEAHQY 170

Query: 666 FCESXXXXXXXXXXXLTLNPERYTGY 743
                          L  NPER+TGY
Sbjct: 171 CYVDNELDSGCVYVSLLENPERFTGY 196


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 246 CFDELHGSLGDCSCKVDTIDFFNNVKIFPRIQSIV 350
           C D L  S+G  S  +DT++  + +  FPRI+ I+
Sbjct: 10  CVDSLQISIGTLSSSIDTLE--SGIHDFPRIKHIL 42


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 327  FPRIQSIVTKDYFRFYKVNLKKECPFWADDS 419
            FP     +T  +F+ YK++++    +W D S
Sbjct: 1059 FPNETRFMTSFFFQIYKISMRNFVAYWRDSS 1089


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 189 IVQAVGYDTELTKPCDSTACFDELHGSLGDCSCKVDTIDFFNN 317
           ++ ++GY  E T+     + F +  GS+G C     ++ F  N
Sbjct: 34  LLMSLGYKPEFTREFSYVSIFGQSFGSMGLCPAMAGSLIFSMN 76


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 235 TVQPASMSSTGPWGTAPVKST 297
           +VQP +MS   PWGT  + +T
Sbjct: 157 SVQPDTMSCLSPWGTERLTAT 177


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 453 CTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDLDH 572
           CT++S     + +N + +D + A + SK +  + KSDL H
Sbjct: 172 CTQKSAQ-MGSEFNPDSIDSSLAYRLSKLSMGNSKSDLSH 210


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 273 GDCSCKVDTIDFFNNVKIFPRIQSIVTKDY 362
           G C CK + ID  +N     R  ++  +DY
Sbjct: 340 GRCFCKPEEIDLSSNSSCIARFINLTNEDY 369


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 276 PPRTRGAHRSRLYCRKASLAPCRNQPP 196
           PP TR   R  L  R  SL P  +QPP
Sbjct: 51  PPPTRRLPRKPLPFRSTSLQPPSSQPP 77


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 525 WWQAFHLHTHYYIQFHSQ--VHFPSCKSLYG 439
           W ++ HL T   + FHSQ  +H+ +    YG
Sbjct: 108 WTKSVHLQTDRTVDFHSQGGIHYSTRIPKYG 138


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 390 KECPFWADDSRCAMKYCHIKTCTKESVPGYETGYNNEYVDETPATKYSKEAQSDCKSDL 566
           K  P ++D+   A+K   +       V    T Y      +TP +K   E  SDC S +
Sbjct: 186 KGLPRFSDEVSQALKNVPLIDVDSMGVMAPGTFYERAATTQTPGSKPVPEGNSDCLSGI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,820
Number of Sequences: 5004
Number of extensions: 57946
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)