Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30596
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.87 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.87 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 372 SFEYDTTTSPSIININYYIVCKYDSNEFTINLT 470
           S E+D    P++ N  +YI C+    +   N+T
Sbjct: 199 SVEWDIIKVPAVRNEAFYICCEEPYPDIVFNIT 231


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 372 SFEYDTTTSPSIININYYIVCKYDSNEFTINLT 470
           S E+D    P+  N  YY  C    ++ T N+T
Sbjct: 212 SVEWDILEVPASRNEEYYPCCTEPYSDITFNIT 244


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 372 SFEYDTTTSPSIININYYIVCKYDSNEFTINLT 470
           S E+D    P++ N  +Y  C     + T N+T
Sbjct: 207 SVEWDILEVPAVRNEKFYTCCDEPYLDITFNIT 239


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 372 SFEYDTTTSPSIININYYIVCKYDSNEFTINLT 470
           S E+D    P++ N  +Y  C     + T N+T
Sbjct: 207 SVEWDILEVPAVRNEKFYTCCDEPYLDITFNIT 239


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 372 SFEYDTTTSPSIININYYIVCKYDSNEFTINLT 470
           S E+D    P++ N  +Y  C     + T N+T
Sbjct: 203 SVEWDILEVPAVRNEKFYTCCDEPYLDITFNIT 235


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 399 PSIININYYIVCKYDSNEFTINLTNVNILKDSLSLCV 509
           P+  +I +YI+ +  +  +T+NL    +L   L + V
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLV 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,785
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)