Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30594
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   2.1  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    27   3.6  
SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   8.4  

>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 255 GRCFLDTQRFLFKEGFLWDYDNVQDSEVL 341
           G CF  T +FL  +G  WD+ +V + +V+
Sbjct: 324 GGCFFWTYKFLHGKGGDWDFRSVVEDKVI 352


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 732 TYSIVL*HITDLLHGGVDMLYQFYYYCAVV 643
           TY+I   H+T+  H G +    ++++C VV
Sbjct: 231 TYNIYTYHLTNTHHNGFECGIYYWHFCDVV 260


>SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +2

Query: 44  LLSGLSVNIGIIYTSVEFYLSRTPARKRLKIVWKRVRESSKGINNNPKLLNRKYVYPSLS 223
           +L   S  + ++     F   RT  +   K++W    E       N   L R   YPS +
Sbjct: 15  VLKEFSDGVDLMELKENFLYIRTREKIEAKLIWAGEWEWKPVNETNENNLERGRQYPSAN 74

Query: 224 IPLQEN 241
             L EN
Sbjct: 75  SALMEN 80


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 431 CTYSCGLTKRPT-TLLSRKLYSGLIFITRCYSFAVKFNREHFL 556
           CTYS G  K+P    L+ +  SG +    CYS ++  + +H L
Sbjct: 35  CTYSMGYLKQPLYACLTCQKASGSLNAV-CYSCSISCHADHDL 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,876
Number of Sequences: 5004
Number of extensions: 72277
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)