Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30593
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 272 3e-74
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 116 3e-27
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 33 0.055
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 29 0.68
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.68
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 27 3.6
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 6.3
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 25 8.4
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 272 bits (667), Expect = 3e-74
Identities = 130/219 (59%), Positives = 165/219 (75%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA+RLK++QN A LTTFNE DMS ++A RKK+ D K+ +K+G MS F KA A+
Sbjct: 232 IAERLKESQNRAASLTTFNECDMSAVVALRKKYKDEILKETGVKIGFMSFFSKACTQAMK 291
Query: 182 DQPVVNAVIEE----NEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLA 349
P +N IE + ++YRD+ D+S+AVATPKGLV PVIRN ++M+ +IE IA L
Sbjct: 292 QIPAINGSIEGEGKGDTLVYRDFCDLSIAVATPKGLVTPVIRNAESMSLLEIESAIATLG 351
Query: 350 EKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVV 529
KAR GKL IE+M GTFTISNGG+FGSL GTPIIN PQ+A+LG+H I ERP+ +NGQVV
Sbjct: 352 SKARAGKLAIEDMASGTFTISNGGIFGSLYGTPIINLPQTAVLGLHAIKERPVVINGQVV 411
Query: 530 IRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
RPMMY+ALTYDHR++DGREAV FLR +KE +EDPA ++
Sbjct: 412 PRPMMYLALTYDHRMVDGREAVTFLRLVKEYIEDPAKML 450
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 116 bits (280), Expect = 3e-27
Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 3/218 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA RL +++N N ++M I+ R L+ KL + +KA AL
Sbjct: 267 IASRLAESKNMNPHYYVTVSVNMEKIIRLRAA-LNAMADGR-YKLSVNDLVIKATTAALR 324
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
P VNA + I VDIS+AVATP GL+ PVIRN + A+I ++AR
Sbjct: 325 QVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRAR 384
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPI---ALNGQVVI 532
KL EE GGTFTISN G+F T IINPPQ+ IL + + + +
Sbjct: 385 NNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTVVPDSTSEKGFKV 444
Query: 533 RPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
P+M L+ DHR++DG A F +K+ +E+P I+
Sbjct: 445 APIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIM 482
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 32.7 bits (71), Expect = 0.055
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 385 NGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERP 522
NG+ +VH VS+G+ NH +S+ +G + L A +S++P
Sbjct: 51 NGKPSVHDSVGSDASVSNGHNNHNESSLWTSGIPKALEEATKSKKP 96
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 29.1 bits (62), Expect = 0.68
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 119 KHSIKLGLMS--PFVKAAANALMDQPVVNAVIEENEIIYRD----YV-DISVAVATPKGL 277
K I+ GL S PF++ A+ + ++ P+V A I +I + D Y+ I V+ GL
Sbjct: 395 KLRIRWGLSSDYPFIQTASFSFLETPIVYANIRPIDIPFLDADIFYIPGIGQFVSEQLGL 454
Query: 278 VVPVIRNVQNMTYADIELTIAGLAEKARTG 367
++ + NM D+ +AG+A G
Sbjct: 455 LLNSMVLWPNMFDYDLSAMMAGIASGTAVG 484
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.68
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = -2
Query: 607 SEEEYSFAAVYQPVVVS*GNIHHGPDHDLAVQSDGPLEDAVHTQYSRLRRIDDWRSHQRP 428
S + Y A P+ + + P+ D + S PL HT+ ++ ++D R
Sbjct: 62 SVDPYVDANPLDPLAAAKASFADFPEQDDSQSSTSPLSSKYHTKKNKQIFVEDSRRGGAA 121
Query: 427 ENAAIADGERSAVHFFDRELTGSRFFR*PS 338
NAA ++S +++R T R P+
Sbjct: 122 SNAAAIAAKKSG--YYERTSTRKRSLTVPT 149
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 101 LDTFTKKHSIKLGLMSPFVKAAANALMDQPVVNAVIEENEIIYRDYVDISVAVAT 265
L++F K +S+ + ++ PFV +A P++ AV + + + D+S T
Sbjct: 225 LESFAK-NSVDIEMLKPFVSQRIDAFSQDPILLAVTAKLSALQKKVNDVSYRFKT 278
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 209 EENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEM 388
E+N ++ D V++ K L+VPV ++ + + I + +A + + KLT+E
Sbjct: 186 EDNNLVTEDRVNLGA-----KLLLVPVQNLIKLLKVSKISVDLAVIDHSFQDQKLTLEVG 240
Query: 389 DGG 397
+GG
Sbjct: 241 NGG 243
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 527 VIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVE 628
V+ + YDH L DG LF + + EG++
Sbjct: 112 VLNDKSELVFIYDHSLFDGGSGPLFHKYVLEGLQ 145
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDD---IQR----DRHVPHHGIP*EAPR 105
H S E SEHE D+ I+R D +P G EAPR
Sbjct: 197 HNSKLEESSEHEEEEDEESNIERTEDSDHQIPQRGGTLEAPR 238
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSP 151
+++++K TN++ T+F +D S + K T + H +++ L+ P
Sbjct: 73 VSRQIKSYWLTNSLSTSFPTVDYSEPDLEKVKRTLTKLQNHLLEVSLIEP 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,461
Number of Sequences: 5004
Number of extensions: 60566
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -