Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30593
(728 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003564-1|AAO39568.1| 468|Drosophila melanogaster LP03989p pro... 358 4e-99
AY089515-1|AAL90253.1| 468|Drosophila melanogaster GM01350p pro... 358 4e-99
AE014297-1281|AAF54625.1| 468|Drosophila melanogaster CG5214-PA... 358 4e-99
BT024948-1|ABE01178.1| 224|Drosophila melanogaster IP16013p pro... 111 9e-25
BT023873-1|AAZ86794.1| 512|Drosophila melanogaster AT21758p pro... 111 9e-25
AE014134-1275|AAF52515.1| 421|Drosophila melanogaster CG5261-PA... 111 9e-25
AE014134-1274|AAF52514.1| 512|Drosophila melanogaster CG5261-PB... 111 9e-25
AY061469-1|AAL29017.1| 462|Drosophila melanogaster LD43554p pro... 111 1e-24
AE014298-2103|AAF48423.1| 462|Drosophila melanogaster CG5599-PA... 111 1e-24
AY069568-1|AAL39713.1| 513|Drosophila melanogaster LD29830p pro... 40 0.003
AE014134-1720|AAF52825.1| 513|Drosophila melanogaster CG4602-PA... 40 0.003
AF055719-1|AAC32822.3| 513|Drosophila melanogaster splicing fac... 39 0.008
BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p pro... 36 0.043
AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC... 36 0.043
AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA... 36 0.043
U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomer... 35 0.13
M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase ... 35 0.13
AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p pro... 31 2.1
AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein... 31 2.1
AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein... 31 2.1
AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA... 31 2.1
BT001860-1|AAN71623.1| 236|Drosophila melanogaster RH66388p pro... 29 8.6
AY069182-1|AAL39327.2| 577|Drosophila melanogaster GH22839p pro... 29 8.6
AJ422083-1|CAD19444.1| 681|Drosophila melanogaster fragile X re... 29 8.6
AJ422082-1|CAD19443.1| 381|Drosophila melanogaster fragile X re... 29 8.6
AJ271221-1|CAB66340.1| 684|Drosophila melanogaster fragile X re... 29 8.6
AF305881-1|AAG22045.1| 681|Drosophila melanogaster KH domain co... 29 8.6
AF205597-1|AAF14640.1| 681|Drosophila melanogaster Fragile X re... 29 8.6
AF205596-1|AAF14639.1| 681|Drosophila melanogaster Fragile X re... 29 8.6
AE014297-1092|AAN13453.1| 643|Drosophila melanogaster CG6203-PE... 29 8.6
AE014297-1091|AAF54493.2| 684|Drosophila melanogaster CG6203-PA... 29 8.6
AE014297-1090|AAN13452.1| 681|Drosophila melanogaster CG6203-PD... 29 8.6
AE014297-1089|AAN13451.1| 681|Drosophila melanogaster CG6203-PC... 29 8.6
AE013599-615|AAF59115.1| 236|Drosophila melanogaster CG14756-PA... 29 8.6
>BT003564-1|AAO39568.1| 468|Drosophila melanogaster LP03989p
protein.
Length = 468
Score = 358 bits (881), Expect = 4e-99
Identities = 172/218 (78%), Positives = 193/218 (88%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA RLKDAQNT AMLTTFNE+DMS+ M FRK++LD FTKK+ IK G MS F KA+A AL
Sbjct: 251 IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSIFAKASAYALQ 310
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
DQPVVNAVI+ +I+YRDYVDISVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR
Sbjct: 311 DQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKAR 370
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541
+T+E+MDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPM
Sbjct: 371 RDAITVEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPM 430
Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIVAGL 655
MYIALTYDHR+IDGREAVLFLRKIK VE+PA IVAGL
Sbjct: 431 MYIALTYDHRIIDGREAVLFLRKIKAAVENPAIIVAGL 468
>AY089515-1|AAL90253.1| 468|Drosophila melanogaster GM01350p
protein.
Length = 468
Score = 358 bits (881), Expect = 4e-99
Identities = 172/218 (78%), Positives = 193/218 (88%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA RLKDAQNT AMLTTFNE+DMS+ M FRK++LD FTKK+ IK G MS F KA+A AL
Sbjct: 251 IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSIFAKASAYALQ 310
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
DQPVVNAVI+ +I+YRDYVDISVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR
Sbjct: 311 DQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKAR 370
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541
+T+E+MDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPM
Sbjct: 371 RDAITVEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPM 430
Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIVAGL 655
MYIALTYDHR+IDGREAVLFLRKIK VE+PA IVAGL
Sbjct: 431 MYIALTYDHRIIDGREAVLFLRKIKAAVENPAIIVAGL 468
>AE014297-1281|AAF54625.1| 468|Drosophila melanogaster CG5214-PA
protein.
Length = 468
Score = 358 bits (881), Expect = 4e-99
Identities = 172/218 (78%), Positives = 193/218 (88%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA RLKDAQNT AMLTTFNE+DMS+ M FRK++LD FTKK+ IK G MS F KA+A AL
Sbjct: 251 IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSIFAKASAYALQ 310
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
DQPVVNAVI+ +I+YRDYVDISVAVATP+GLVVPVIRNV+ M YADIE+ +AGLA+KAR
Sbjct: 311 DQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNVEGMNYADIEIALAGLADKAR 370
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALNGQVVIRPM 541
+T+E+MDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIA+ G+V IRPM
Sbjct: 371 RDAITVEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIAVKGEVKIRPM 430
Query: 542 MYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIVAGL 655
MYIALTYDHR+IDGREAVLFLRKIK VE+PA IVAGL
Sbjct: 431 MYIALTYDHRIIDGREAVLFLRKIKAAVENPAIIVAGL 468
>BT024948-1|ABE01178.1| 224|Drosophila melanogaster IP16013p
protein.
Length = 224
Score = 111 bits (267), Expect = 9e-25
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA+RL +++ + + ++ FR K ++ +K ++ + +KA A A +
Sbjct: 7 IAKRLLESKTQLPHYYVTVQCQVDKLLKFRAK-VNKKYEKQGARVSVNDFIIKAVAIASL 65
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
P N+ + I D VD+SVAV+T KGL+ P++ N +I + LA KAR
Sbjct: 66 KVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKAR 125
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGM----HGIFERPIALNGQVV 529
KL E GGT ++SN G+FG +INPPQS IL + + P +L G
Sbjct: 126 DNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKE 185
Query: 530 IRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
+ M+ + L+ DHR++DG A +L+ ++ +EDP+ +V
Sbjct: 186 VN-MLTVTLSADHRVVDGAVAARWLQHFRDYMEDPSNMV 223
>BT023873-1|AAZ86794.1| 512|Drosophila melanogaster AT21758p
protein.
Length = 512
Score = 111 bits (267), Expect = 9e-25
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA+RL +++ + + ++ FR K ++ +K ++ + +KA A A +
Sbjct: 295 IAKRLLESKTQLPHYYVTVQCQVDKLLKFRAK-VNKKYEKQGARVSVNDFIIKAVAIASL 353
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
P N+ + I D VD+SVAV+T KGL+ P++ N +I + LA KAR
Sbjct: 354 KVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKAR 413
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGM----HGIFERPIALNGQVV 529
KL E GGT ++SN G+FG +INPPQS IL + + P +L G
Sbjct: 414 DNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKE 473
Query: 530 IRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
+ M+ + L+ DHR++DG A +L+ ++ +EDP+ +V
Sbjct: 474 VN-MLTVTLSADHRVVDGAVAARWLQHFRDYMEDPSNMV 511
>AE014134-1275|AAF52515.1| 421|Drosophila melanogaster CG5261-PA,
isoform A protein.
Length = 421
Score = 111 bits (267), Expect = 9e-25
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA+RL +++ + + ++ FR K ++ +K ++ + +KA A A +
Sbjct: 204 IAKRLLESKTQLPHYYVTVQCQVDKLLKFRAK-VNKKYEKQGARVSVNDFIIKAVAIASL 262
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
P N+ + I D VD+SVAV+T KGL+ P++ N +I + LA KAR
Sbjct: 263 KVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKAR 322
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGM----HGIFERPIALNGQVV 529
KL E GGT ++SN G+FG +INPPQS IL + + P +L G
Sbjct: 323 DNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKE 382
Query: 530 IRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
+ M+ + L+ DHR++DG A +L+ ++ +EDP+ +V
Sbjct: 383 VN-MLTVTLSADHRVVDGAVAARWLQHFRDYMEDPSNMV 420
>AE014134-1274|AAF52514.1| 512|Drosophila melanogaster CG5261-PB,
isoform B protein.
Length = 512
Score = 111 bits (267), Expect = 9e-25
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 IAQRLKDAQNTNAMLTTFNEIDMSHIMAFRKKHLDTFTKKHSIKLGLMSPFVKAAANALM 181
IA+RL +++ + + ++ FR K ++ +K ++ + +KA A A +
Sbjct: 295 IAKRLLESKTQLPHYYVTVQCQVDKLLKFRAK-VNKKYEKQGARVSVNDFIIKAVAIASL 353
Query: 182 DQPVVNAVIEENEIIYRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKAR 361
P N+ + I D VD+SVAV+T KGL+ P++ N +I + LA KAR
Sbjct: 354 KVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLEISKDVKALAAKAR 413
Query: 362 TGKLTIEEMDGGTFTISNGGVFGSLMGTPIINPPQSAILGM----HGIFERPIALNGQVV 529
KL E GGT ++SN G+FG +INPPQS IL + + P +L G
Sbjct: 414 DNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSCILAIGTTTKQLVADPDSLKGFKE 473
Query: 530 IRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPATIV 646
+ M+ + L+ DHR++DG A +L+ ++ +EDP+ +V
Sbjct: 474 VN-MLTVTLSADHRVVDGAVAARWLQHFRDYMEDPSNMV 511
>AY061469-1|AAL29017.1| 462|Drosophila melanogaster LD43554p
protein.
Length = 462
Score = 111 bits (266), Expect = 1e-24
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 5/199 (2%)
Frame = +2
Query: 56 NEIDMSHIMAFRKKHLDTFTKKHSI-KLGLMSPFVKAAANALMDQPVVNAVIE--ENEII 226
+EIDM+ +M FR + L K++ + KL M +KAA+ AL P+VN+ ++ ++
Sbjct: 261 DEIDMTQLMQFRNQ-LQLVAKENGVPKLTFMPFCIKAASIALSKYPIVNSSLDLASESLV 319
Query: 227 YRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFT 406
++ +ISVA+ TP+GLVVP I+N Q T +I + L E+ RTG L+ + GTF+
Sbjct: 320 FKGAHNISVAIDTPQGLVVPNIKNCQTKTIIEIAKDLNALVERGRTGSLSPADFADGTFS 379
Query: 407 ISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALN--GQVVIRPMMYIALTYDHRLID 580
+SN GV G P I PQ AI G G + N +VV +M ++ + DHR+ID
Sbjct: 380 LSNIGVIGGTYTHPCIMAPQVAI-GAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVID 438
Query: 581 GREAVLFLRKIKEGVEDPA 637
G F K+ +E+PA
Sbjct: 439 GVTMASFSNVWKQYLENPA 457
>AE014298-2103|AAF48423.1| 462|Drosophila melanogaster CG5599-PA
protein.
Length = 462
Score = 111 bits (266), Expect = 1e-24
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 5/199 (2%)
Frame = +2
Query: 56 NEIDMSHIMAFRKKHLDTFTKKHSI-KLGLMSPFVKAAANALMDQPVVNAVIE--ENEII 226
+EIDM+ +M FR + L K++ + KL M +KAA+ AL P+VN+ ++ ++
Sbjct: 261 DEIDMTQLMQFRNQ-LQLVAKENGVPKLTFMPFCIKAASIALSKYPIVNSSLDLASESLV 319
Query: 227 YRDYVDISVAVATPKGLVVPVIRNVQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFT 406
++ +ISVA+ TP+GLVVP I+N Q T +I + L E+ RTG L+ + GTF+
Sbjct: 320 FKGAHNISVAIDTPQGLVVPNIKNCQTKTIIEIAKDLNALVERGRTGSLSPADFADGTFS 379
Query: 407 ISNGGVFGSLMGTPIINPPQSAILGMHGIFERPIALN--GQVVIRPMMYIALTYDHRLID 580
+SN GV G P I PQ AI G G + N +VV +M ++ + DHR+ID
Sbjct: 380 LSNIGVIGGTYTHPCIMAPQVAI-GAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVID 438
Query: 581 GREAVLFLRKIKEGVEDPA 637
G F K+ +E+PA
Sbjct: 439 GVTMASFSNVWKQYLENPA 457
>AY069568-1|AAL39713.1| 513|Drosophila melanogaster LD29830p
protein.
Length = 513
Score = 39.9 bits (89), Expect = 0.003
Identities = 33/125 (26%), Positives = 51/125 (40%)
Frame = +1
Query: 190 RGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR* 369
R R R+R ++ RR G+H+ RSR + RS H R+ S + G +R
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRS 368
Query: 370 AHDRRNGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVY 549
+ R R+ H + R R S + S G + R+ RS++ R + H
Sbjct: 369 SRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS----GNGKRSRSRERSKKSHRSEKHSSR 424
Query: 550 CPNLR 564
P R
Sbjct: 425 SPRSR 429
>AE014134-1720|AAF52825.1| 513|Drosophila melanogaster CG4602-PA
protein.
Length = 513
Score = 39.9 bits (89), Expect = 0.003
Identities = 33/125 (26%), Positives = 51/125 (40%)
Frame = +1
Query: 190 RGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR* 369
R R R+R ++ RR G+H+ RSR + RS H R+ S + G +R
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRS 368
Query: 370 AHDRRNGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVY 549
+ R R+ H + R R S + S G + R+ RS++ R + H
Sbjct: 369 SRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS----GNGKRSRSRERSKKSHRSEKHSSR 424
Query: 550 CPNLR 564
P R
Sbjct: 425 SPRSR 429
>AF055719-1|AAC32822.3| 513|Drosophila melanogaster splicing factor
SRp54 protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.008
Identities = 32/125 (25%), Positives = 51/125 (40%)
Frame = +1
Query: 190 RGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR* 369
R R R+R ++ RR G+H+ RSR + RS H R+ S + G +R
Sbjct: 311 RSRRSGSRERRSVSRSRRSRSRGKHSSRSR--SKRSRSRHRRSSSRSRRSRSRGGKHSRS 368
Query: 370 AHDRRNGRRNVHHQQWRRFRVSDGNANHQSASICYTGYARHLRAAHRSERPSRDQAHDVY 549
+ R R+ H + R R S + S G + R+ R+++ R + H
Sbjct: 369 SRSRGKRSRSRHRRSTSRSRSSRSHGTGGGGS----GNGKRSRSRERTKKSHRSEKHSSR 424
Query: 550 CPNLR 564
P R
Sbjct: 425 SPRSR 429
>BT023755-1|AAZ41763.1| 974|Drosophila melanogaster RE58921p
protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.043
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDVTFREGGRQRPD 180
H S+ S+H+ D RDR H ++ +H++ S R+ R +
Sbjct: 40 HSSSSSSSSKHKSSSKDKHRDREREH-----KSSNSSSSSKEHKSSS----RDKDRHKSS 90
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSE 360
+ R ++RD R S H ++ + + +S HH +S E
Sbjct: 91 SSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS------GHHKRSSKDKE 144
Query: 361 NR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAHRSERPSRDQ 534
R R + H+ R + +++H+S+S + ++H + H S S+DQ
Sbjct: 145 RRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSSKDQ 203
>AE014298-2125|AAX52496.1| 974|Drosophila melanogaster CG6146-PC,
isoform C protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.043
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDVTFREGGRQRPD 180
H S+ S+H+ D RDR H ++ +H++ S R+ R +
Sbjct: 40 HSSSSSSSSKHKSSSKDKHRDREREH-----KSSNSSSSSKEHKSSS----RDKDRHKSS 90
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSE 360
+ R ++RD R S H ++ + + +S HH +S E
Sbjct: 91 SSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS------GHHKRSSKDKE 144
Query: 361 NR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAHRSERPSRDQ 534
R R + H+ R + +++H+S+S + ++H + H S S+DQ
Sbjct: 145 RRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSSKDQ 203
>AE014298-2124|AAF48440.1| 974|Drosophila melanogaster CG6146-PA,
isoform A protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.043
Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDVTFREGGRQRPD 180
H S+ S+H+ D RDR H ++ +H++ S R+ R +
Sbjct: 40 HSSSSSSSSKHKSSSKDKHRDREREH-----KSSNSSSSSKEHKSSS----RDKDRHKSS 90
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSE 360
+ R ++RD R S H ++ + + +S HH +S E
Sbjct: 91 SSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS------GHHKRSSKDKE 144
Query: 361 NR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAHRSERPSRDQ 534
R R + H+ R + +++H+S+S + ++H + H S S+DQ
Sbjct: 145 RRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSSKDQ 203
>U80064-1|AAC24158.1| 972|Drosophila melanogaster DNA topoisomerase
I protein.
Length = 972
Score = 34.7 bits (76), Expect = 0.13
Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 1/178 (0%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDVTFREGGRQRPD 180
H S+ S+H+ D RDR H ++ +H++ S R+ R +
Sbjct: 38 HHSSSSSSSKHKSSSKDKHRDREREH-----KSSNSSSSSKEHKSSS----RDKDRHKSS 88
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSE 360
+ R ++RD R S H ++ + + +S HH +S E
Sbjct: 89 SSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS------GHHKRSSKDKE 142
Query: 361 NR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAHRSERPSRD 531
R R + H+ R + +++H+S+S + ++H + H S S+D
Sbjct: 143 RRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSSKD 200
>M74557-1|AAA28951.1| 972|Drosophila melanogaster topoisomerase I
protein.
Length = 972
Score = 34.7 bits (76), Expect = 0.13
Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 1/178 (0%)
Frame = +1
Query: 1 HRSAFEGRSEHERHVDDIQRDRHVPHHGIP*EAPRHLH*EAQHQTRSDVTFREGGRQRPD 180
H S+ S+H+ D RDR H ++ +H++ S R+ R +
Sbjct: 38 HHSSSSSSSKHKSSSKDKHRDREREH-----KSSNSSSSSKEHKSSS----RDKDRHKSS 88
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSE 360
+ R ++RD R S H ++ + + +S HH +S E
Sbjct: 89 SSSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSS------GHHKRSSKDKE 142
Query: 361 NR*AHDRRNGRRNVHHQQWRRFRVSD-GNANHQSASICYTGYARHLRAAHRSERPSRD 531
R R + H+ R + +++H+S+S + ++H + H S S+D
Sbjct: 143 RRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSSSKD 200
>AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p protein.
Length = 1422
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 250 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 414
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1290 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1344
>AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein
protein.
Length = 1827
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 250 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 414
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1695 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1749
>AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein
protein.
Length = 1831
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 250 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 414
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1699 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1753
>AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA
protein.
Length = 1831
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 250 GSGRHTERSRRAGHQKRSEHDLC*YRAHHSWASGKSENR*AHDRRNGRRNVHHQQ 414
G G S + HQ+R++ +L A+ +WA + + +H + ++ HH Q
Sbjct: 1699 GGGGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQ 1753
>BT001860-1|AAN71623.1| 236|Drosophila melanogaster RH66388p
protein.
Length = 236
Score = 28.7 bits (61), Expect = 8.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +1
Query: 154 REGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTER-------SRRAGHQKRS 303
R GGR+ G +G +R+R N RR G G+ R S+R+GH++R+
Sbjct: 157 RRGGRRNGKGRRKGRGSSKRRRGN----RRCGGRGKRGRRGQRKRTPSKRSGHKRRT 209
>AY069182-1|AAL39327.2| 577|Drosophila melanogaster GH22839p
protein.
Length = 577
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 328 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 386
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 387 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 445
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 446 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 473
>AJ422083-1|CAD19444.1| 681|Drosophila melanogaster fragile X
related protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AJ422082-1|CAD19443.1| 381|Drosophila melanogaster fragile X
related protein.
Length = 381
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 132 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 190
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 191 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 249
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 250 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 277
>AJ271221-1|CAB66340.1| 684|Drosophila melanogaster fragile X
related protein protein.
Length = 684
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 435 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 493
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 494 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 552
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 553 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 580
>AF305881-1|AAG22045.1| 681|Drosophila melanogaster KH domain
containing RNA-bindingprotein FMR1 protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AF205597-1|AAF14640.1| 681|Drosophila melanogaster Fragile X
related protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AF205596-1|AAF14639.1| 681|Drosophila melanogaster Fragile X
related protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AE014297-1092|AAN13453.1| 643|Drosophila melanogaster CG6203-PE,
isoform E protein.
Length = 643
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 394 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 452
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 453 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 511
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 512 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 539
>AE014297-1091|AAF54493.2| 684|Drosophila melanogaster CG6203-PA,
isoform A protein.
Length = 684
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 435 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 493
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 494 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 552
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 553 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 580
>AE014297-1090|AAN13452.1| 681|Drosophila melanogaster CG6203-PD,
isoform D protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AE014297-1089|AAN13451.1| 681|Drosophila melanogaster CG6203-PC,
isoform C protein.
Length = 681
Score = 28.7 bits (61), Expect = 8.6
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 13/149 (8%)
Frame = +1
Query: 181 GPARGERCYRRKRDNL*GLRRYFGSGRHTERSRRAGHQKRSEHD-LC*YRAHHSWASGKS 357
GP G +R +N Y G H +R ++ G+ R D YR A G
Sbjct: 432 GPGGGNGLNQRYHNNRRDEDDYNSRGDH-QRDQQRGYNDRGGGDNTGSYRGGGGGAGGPG 490
Query: 358 ENR*A--------HDRRNGRRNVHH----QQWRRFRVSDGNANHQSASICYTGYARHLRA 501
NR +D++NGR HH ++ R R + ++ Y G +R R
Sbjct: 491 NNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETR-EMSSVERADSNSSYEGSSRRRRR 549
Query: 502 AHRSERPSRDQAHDVYCPNLRPQADRRPR 588
+ PS V N +PQ+ ++P+
Sbjct: 550 QKNNNGPSNTNG-AVANNNNKPQSAQQPQ 577
>AE013599-615|AAF59115.1| 236|Drosophila melanogaster CG14756-PA
protein.
Length = 236
Score = 28.7 bits (61), Expect = 8.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +1
Query: 154 REGGRQRPDGPARGERCYRRKRDNL*GLRRYFGSGRHTER-------SRRAGHQKRS 303
R GGR+ G +G +R+R N RR G G+ R S+R+GH++R+
Sbjct: 157 RRGGRRNGKGRRKGRGSSKRRRGN----RRCGGRGKRGRRGQRKRTPSKRSGHKRRT 209
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,375,804
Number of Sequences: 53049
Number of extensions: 755764
Number of successful extensions: 3201
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3182
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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