Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30592
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    28   1.2  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    27   2.1  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   4.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   8.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   8.3  

>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 240 NNINGWKR-LGLRVYKTTF*FSFKASYTYEHCKSH 139
           N I G+++ LGLRV+ ++   S     TYEH KSH
Sbjct: 213 NGIFGFEKGLGLRVFASSLGLSIYLG-TYEHVKSH 246


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 431 LPIRIEYLCTGQCFQFFCSNVKDASLLRR*ASQYSTYTYCISLSFQSFITRCSSTL 598
           LP  + YLC     Q+FC  V+  + L    ++ S  T  + L+ + F++ C S +
Sbjct: 226 LPSGVWYLCFNTLAQYFC--VRGVNAL---GAETSALTVSVVLNVRKFVSLCLSLI 276


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 113 RFYTNLKKCQEKYNFPSGRIYNMDET 36
           R +   ++ QEK  F S R YN D T
Sbjct: 32  RLFKTTQELQEKVKFSSSRFYNKDST 57


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 485 SNVKDASLLRR*ASQYSTYTYCISLSFQSFITRCSSTLYIS 607
           S++  +SLLRR A+ Y +    +    + F++R  +  YIS
Sbjct: 325 SSLNQSSLLRRPANTYFSAQSYLRYQAKKFVSRFDANCYIS 365


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 110 FYTNLKKCQEKYNFPSGRIY 51
           F  NLK C    NFP+G  Y
Sbjct: 116 FLCNLKNCLIDNNFPTGNFY 135


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 44  PYYIFDLKGSYIFLDTFSSLYKIYL 118
           PY I  L G ++FL  + SLY   L
Sbjct: 432 PYIIILLNGVFLFLQGYKSLYPFRL 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,908
Number of Sequences: 5004
Number of extensions: 52295
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)