Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30588
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    47   2e-06
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   4.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
 Frame = +3

Query: 120 SAKMTVSATNPQSVIEVIENKVRSDVSQASGC--RAMYA--WC---YEWRQIVSEFISTL 278
           S K +++  +    I +  N++ ++ S  SG     +Y   WC   + +R+  +EF+ TL
Sbjct: 262 SRKPSIAEQDSSQDITMPPNEIIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTL 321

Query: 279 LLLVFGC----MACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVTLASL 446
           +L+VFG      A + +        +  A GFG ++   V I G ISG H+NP+VT++  
Sbjct: 322 VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLA 379

Query: 447 IWGAISFPLAIAFIVAQCAGAILGYGL 527
           I+    +     +I  Q  GA  G  L
Sbjct: 380 IFRKFPWYKVPIYIFFQIWGAFFGGAL 406


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 652  QFKNERAAVKTASTIKA*NNV-ISVRGNVIQTPSMSMCE 539
            QFKN ++ +   ST  A NN+ ++ R   I++PS+ +CE
Sbjct: 1784 QFKNSKS-ISNVSTHLASNNLNLASRDTPIKSPSVGICE 1821


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 365 FGSLV*CPNIWTYIWSAHESVRHTGLAD 448
           FGSL+ C  +W +++S   S RH  L D
Sbjct: 358 FGSLIACAPMWDFVYS---SSRHNTLLD 382


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 142 AETVIFADSLNFDDTENHITKTQQGTTANQVFCSFFFFRT 23
           A    F  S N +DT   +T+T + +T N  F S+   RT
Sbjct: 458 ASNTHFFLSENQNDTSERLTRTLRKSTKNYTFGSYILGRT 497


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 586 SVRGNVIQTPSMSMCETAINNPYPKIAPAHCATIN 482
           SVR   I+T  + + + AI + YP++  A C  +N
Sbjct: 292 SVRLVAIETVGLMLQDNAIWSDYPRVWSAFCGRLN 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,841
Number of Sequences: 5004
Number of extensions: 62654
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)