Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30586
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0698 - 10496316-10498127,10498539-10498559                       31   0.69 
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   2.1  
01_06_1196 + 35322662-35324212                                         28   6.4  
01_06_0203 - 27487469-27489787                                         28   8.5  

>03_02_0698 - 10496316-10498127,10498539-10498559
          Length = 610

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -3

Query: 678 FCYFGY*IVFLSISYCYVHRFRFCRIAVEAPWFVRNV---DLHDDLDLEST 535
           FC FG+ +  L     YVH F F  + V AP+ + +V   ++HDD D+  T
Sbjct: 392 FCVFGWNMERLGFGNMYVHAFTFILLCV-APFLIFSVTALNVHDD-DIRDT 440


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 534 SKYMQSASMRHFDKAARHENPLIVAAGNYIPDPAERMESSRRRPK-HVISDP 382
           S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 54  SNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>01_06_1196 + 35322662-35324212
          Length = 516

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 678 FCYFGY*IVFLSISYCYVHRFRFCRIAVEAPWFVRNVD-LH-DDLDL 544
           FC FG+ +  L     YVH   F  + V AP++V N+  LH  D DL
Sbjct: 316 FCVFGWNMERLGFGNMYVHTAMFLLLCV-APFWVFNITALHIHDYDL 361


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 497 SKWRIDADCIYLLVDSKSRSSWRSTFLTNHGASTAILQKRNL 622
           SK  +  D   +L+D    + W ST     G++ A+L+  NL
Sbjct: 93  SKVLLHDDGYLVLIDVNGSTVWTSTMSAGEGSTAALLESGNL 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,843
Number of Sequences: 37544
Number of extensions: 345290
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)