Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30586
         (713 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    45   9e-05
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    40   0.003
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    40   0.003
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    35   0.096
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    34   0.22 
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    34   0.22 
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    34   0.22 
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    33   0.29 
AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p pro...    33   0.29 
AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein ...    33   0.29 
AE014134-3211|ABC65910.1|   93|Drosophila melanogaster CG41071-P...    29   4.7  

>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown protein.
          Length = 908

 Score = 45.2 bits (102), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = -3

Query: 615  RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLIVAAGNYIPDP 436
            +  R+     WFVRN  LH DL L +    +   S R+ D+  RH N L  A       P
Sbjct: 827  KVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNR--SRP 884

Query: 435  AERMESSRRRPKHVISDPP 379
              R+  +RR+P+ +I+  P
Sbjct: 885  PRRL--NRRQPRDLITRSP 901


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 615 RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPL 469
           R  RI   APW++RN ++H DL ++   + +     ++ +K   H NPL
Sbjct: 818 RILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 615 RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPL 469
           R  RI   APW++RN ++H DL ++   + +     ++ +K   H NPL
Sbjct: 818 RILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 615 RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPL 469
           R  R   + P++VR   LH DL+L +  + +   + R+ D+  RH + L
Sbjct: 833 RAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 615  RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLI--VAAGNYIP 442
            ++ R  + A  + R  D+    +++S  +    AS R+ +    HENPLI  +    Y P
Sbjct: 891  KYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKP 950

Query: 441  DPAERMESSRRR 406
            +   R+E S+ R
Sbjct: 951  N---RLELSKNR 959


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 615  RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLI--VAAGNYIP 442
            ++ R  + A  + R  D+    +++S  +    AS R+ +    HENPLI  +    Y P
Sbjct: 891  KYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKP 950

Query: 441  DPAERMESSRRR 406
            +   R+E S+ R
Sbjct: 951  N---RLELSKNR 959


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 615  RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLI--VAAGNYIP 442
            ++ R  + A  + R  D+    +++S  +    AS R+ +    HENPLI  +    Y P
Sbjct: 891  KYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLIYDLLINAYKP 950

Query: 441  DPAERMESSRRR 406
            +   R+E S+ R
Sbjct: 951  N---RLELSKNR 959


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
            D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 591  APWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLIVAAGN-YIPDPAERMESS 415
            APW++R  D+  DL +      +Q+ + ++ ++   H N L    G   + +   R    
Sbjct: 840  APWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNADPRTRVK 899

Query: 414  RRRPKHVISDPPD 376
            RR  +H   D P+
Sbjct: 900  RRLKRHHPHDLPN 912


>AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p
           protein.
          Length = 718

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 591 APWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLIVAAGN-YIPDPAERMESS 415
           APW++R  D+  DL +      +Q+ + ++ ++   H N L    G   + +   R    
Sbjct: 642 APWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPNSLARKLGTAAVVNADPRTRVK 701

Query: 414 RRRPKHVISDPPD 376
           RR  +H   D P+
Sbjct: 702 RRLKRHHPHDLPN 714


>AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein
           protein.
          Length = 656

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -3

Query: 615 RFCRIAVEAPWFVRNVDLHDDLDLESTSKYMQSASMRHFDKAARHENPLI--VAAGNYIP 442
           ++ R  + A  + R  D+    +++S  +    AS R+ +    HENPLI  +    Y P
Sbjct: 444 KYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPLIYDLLINAYKP 503

Query: 441 DPAERMESSRRR 406
           +   R+E S+ R
Sbjct: 504 N---RLELSKNR 512


>AE014134-3211|ABC65910.1|   93|Drosophila melanogaster CG41071-PA
           protein.
          Length = 93

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 515 RQCATSIKRHDTRTLSSWPPVTTFPILRKE 426
           R  ATS    D+R ++ WP  ++F +LR++
Sbjct: 9   RHSATSATTEDSRVINGWPFKSSFVVLRRQ 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,194,830
Number of Sequences: 53049
Number of extensions: 556236
Number of successful extensions: 1501
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)