Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30585
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   1.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.2  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   8.9  

>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 127 NYEYLLESGYLRSSSMYSRSC 189
           N++Y +E  +L+++S+ S+SC
Sbjct: 218 NFDYYIEKSFLKTASLISKSC 238


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 525 ISHGQLQYIHTCECICKVSWNLHSFRCVWN 436
           ++ G   ++ +    C  S N HS+ C+WN
Sbjct: 108 VNRGDYCFLLSTPVECSASTNSHSYDCLWN 137


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +1

Query: 247 IESKGFRLQLAPFLHKAMKPFTTNLLQLK--ERTS*ITVLIITTDLSNLSSLIRFIYSNT 420
           I +  F +   PF ++A+KP   N + L   +  +   +L    D  +LS  +  I ++ 
Sbjct: 146 IGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYKDSKHLSRYLHIIANSP 205

Query: 421 EYSFSIPDASKAMKIPRHFTDTFARMNI 504
            Y   +    +   +P      F+++++
Sbjct: 206 RYPVILDAKRRVCSLPPIINSEFSKISV 233


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 704 FEEIISNIFLLIALKLVKPRGKLFLNCSVLTY-LYCIPLFVYTYLYY 567
           F E   ++  +  LK+V     +F  C++L Y LY  P   +TYLY+
Sbjct: 619 FMEKFLSLLSINQLKIVVGSLFMFTICNLLMYYLYGSPFLEHTYLYH 665


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 650 PRGKLFLNCSVLTYLYCIPLFVYTYLYYRFIHTLSD--KAFIHLSHT 516
           P G L LNC+  T    +   + + +Y R+   L D     +H+ H+
Sbjct: 17  PAGNLVLNCTATTNKQTLEANLKSAVYQRYPEFLEDWTNVCVHIIHS 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,536
Number of Sequences: 5004
Number of extensions: 52215
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)