Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30580
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    85   5e-19
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    85   5e-19
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 85.4 bits (202), Expect = 5e-19
 Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 8/195 (4%)
 Frame = +2

Query: 143 AGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKKMYRYEGFTSFW 322
           AGG A  +    + P++ VK  LQ+Q     +  S+   Y G+IDC  ++ + +GF S+W
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQI--SEEQRYKGMIDCFVRIPKEQGFLSYW 73

Query: 323 KGILPPILAETPKRAVKFATFEQYKKLFMFGSDTPTP-LTFSLAGL----GAGITEAVLV 487
           +G L  ++   P +A+ FA  ++YK++F+ G D  T  L + +  L     AG T    V
Sbjct: 74  RGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFV 133

Query: 488 NPFEVVKVTLQSNKSLA---TEIPSTWSVTRQIVREHGLGSRGLNKGLTATIARNGVFNM 658
            P +  +  L ++   A    E     +   +I +  G+   GL +G   ++    ++  
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI--TGLYRGFGVSVQGIIIYRA 191

Query: 659 VYFGFYHSVKGYVPE 703
            YFGFY + +G +P+
Sbjct: 192 AYFGFYDTARGMLPD 206



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 33/162 (20%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
 Frame = +2

Query: 53  F*LK*K*NHKYISKMSDVEKLLKQAAMQIGAGGSAGFVEVCIMHPLDLVKTRLQIQSNKS 232
           F  K K    ++  +    + L+     + +GG+AG   +C ++PLD  +TRL     K+
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150

Query: 233 AMKPSDPHYYSGIIDCMKKMYRYEGFTSFWKGILPPILAETPKRAVKFATFEQYKKLFMF 412
                    ++G+ +C+ K+++ +G T  ++G    +      RA  F  ++  + +   
Sbjct: 151 ----GGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD 206

Query: 413 GSDTPTPLTFSLAGLGAGITEAVLVNPFEVV--KVTLQSNKS 532
              TP  +++ +A +   +   ++  PF+ V  ++ +QS ++
Sbjct: 207 PKKTPFLISWGIAQVVTTVA-GIVSYPFDTVRRRMMMQSGRA 247


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 85.4 bits (202), Expect = 5e-19
 Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 8/195 (4%)
 Frame = +2

Query: 143 AGGSAGFVEVCIMHPLDLVKTRLQIQSNKSAMKPSDPHYYSGIIDCMKKMYRYEGFTSFW 322
           AGG A  +    + P++ VK  LQ+Q     +  S+   Y G+IDC  ++ + +GF S+W
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQI--SEEQRYKGMIDCFVRIPKEQGFLSYW 73

Query: 323 KGILPPILAETPKRAVKFATFEQYKKLFMFGSDTPTP-LTFSLAGL----GAGITEAVLV 487
           +G L  ++   P +A+ FA  ++YK++F+ G D  T  L + +  L     AG T    V
Sbjct: 74  RGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFV 133

Query: 488 NPFEVVKVTLQSNKSLA---TEIPSTWSVTRQIVREHGLGSRGLNKGLTATIARNGVFNM 658
            P +  +  L ++   A    E     +   +I +  G+   GL +G   ++    ++  
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI--TGLYRGFGVSVQGIIIYRA 191

Query: 659 VYFGFYHSVKGYVPE 703
            YFGFY + +G +P+
Sbjct: 192 AYFGFYDTARGMLPD 206



 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 33/162 (20%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
 Frame = +2

Query: 53  F*LK*K*NHKYISKMSDVEKLLKQAAMQIGAGGSAGFVEVCIMHPLDLVKTRLQIQSNKS 232
           F  K K    ++  +    + L+     + +GG+AG   +C ++PLD  +TRL     K+
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKA 150

Query: 233 AMKPSDPHYYSGIIDCMKKMYRYEGFTSFWKGILPPILAETPKRAVKFATFEQYKKLFMF 412
                    ++G+ +C+ K+++ +G T  ++G    +      RA  F  ++  + +   
Sbjct: 151 ----GGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD 206

Query: 413 GSDTPTPLTFSLAGLGAGITEAVLVNPFEVV--KVTLQSNKS 532
              TP  +++ +A +   +   ++  PF+ V  ++ +QS ++
Sbjct: 207 PKKTPFLISWGIAQVVTTVA-GIVSYPFDTVRRRMMMQSGRA 247


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 241 FHC*FVTLYLKPSLDQIQWVHNTHFHK 161
           FH      YLKPS D  +    TH  K
Sbjct: 402 FHQEMALYYLKPSYDAQEPAWKTHVWK 428


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 440 FSLAGLGAGITEAVLVNPFEVVKVTLQSNKSLATEIPSTW-SVTRQIVRE 586
           FSL GLG+G   +V        +    SN+ +  +    W  V  ++VR+
Sbjct: 1   FSLGGLGSGFANSVKELRNLAQQAFAHSNQLIIDKSLKGWKEVEYEVVRD 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,135
Number of Sequences: 438
Number of extensions: 4725
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)