Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30576
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.        28   5.1  
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z38112-4|CAA86232.1|  809|Caenorhabditis elegans Hypothetical
           protein E03A3.2 protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 VTVIDPPLQMTKNVTYVQVQRWLR*HHLLLEDNFFI 464
           V VI P   + KNVT    + W+R  H  L+ N+ +
Sbjct: 704 VNVIKPEQNVIKNVTLETRENWVRFLHRALDSNWIV 739


>Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical
           protein F13G3.8 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 660 YNNNISFFLHIYFR*AFSCKFFYSIFYRYKAFS 562
           +N  I  FL+I+F   F    F SIF  Y  FS
Sbjct: 273 FNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFS 305


>U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 660 YNNNISFFLHIYFR*AFSCKFFYSIFYRYKAFS 562
           +N  I  FL+I+F   F    F SIF  Y  FS
Sbjct: 273 FNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFS 305


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 538 IQKQTEEFSISREE*KNISFAAYVRMKKLSS 446
           ++  TE + ISREE KN+    Y+   + +S
Sbjct: 188 VETSTETYKISREELKNVDIEEYINTLRENS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,258
Number of Sequences: 27780
Number of extensions: 225750
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)