Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30573
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   107   1e-24
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.7  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   5.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  107 bits (257), Expect = 1e-24
 Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
 Frame = -3

Query: 670 SDLFDNPALMFQHRYSKPFIPIVCFGLPTILPVILWDELLVVAWNLTIMRYVINFHVFFL 491
           SDL  +P +MF HR+  P    + F  P++   +LW +     +   + R V   H  F 
Sbjct: 190 SDLNSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGDYRGGYFYAGVCRLVFVHHATFC 249

Query: 490 VNSVAHIWGNKPYDKTIKSAENNLVAFATLGEGYHNYHHVFPWDYRCTELGRTWLNY--T 317
           VNS+AH+ G++P+D T  +  + + A  TLGEG HNYHH FP DYR    G  W  Y  T
Sbjct: 250 VNSLAHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYR---NGLRWYEYDPT 306

Query: 316 KLFIDLCAKVGLAYDLKVVSDDVILRRV 233
           K+FI + +  GLAY+L    D+ I + +
Sbjct: 307 KIFIYIASLFGLAYNLNTFPDNEIQKGI 334


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 446 LIIRLVAPDVSDTVH*EEYVEVDNVSHDGEV 538
           L+I L  P + DTV+  +Y  V N  HD  V
Sbjct: 510 LVIALYRPVILDTVNRRDYTNVYNSFHDRRV 540


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 86  EYKYM*FACSTFSESFXGFXVL 151
           EY+Y   ACST S+SF  F  L
Sbjct: 312 EYRYFADACSTSSKSFLRFSFL 333


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 463 NKPYDKTIKSAENNLVAFATLGEGYHNYHH 374
           + P+D+T+K  EN+   +  + +  H Y H
Sbjct: 210 SSPHDETVKKEENDKDQYPPMTKEQHKYIH 239


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = -3

Query: 376 HVFPWDYRCTELGRTWLNYTKLFIDLCAK----VGLAYDLKVVSDDVILRRVKRTGDR 215
           H   W +    + RTW+N  K+           VG AY   ++S   +  +++R G +
Sbjct: 175 HGISWSWLLQLIARTWMNTLKIASQASKTELLIVGTAYACMLISIVSLYLKMRRLGSK 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,550
Number of Sequences: 5004
Number of extensions: 53795
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)