Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30573
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    28   5.9  
08_02_0882 + 22227718-22227790,22227983-22228209                       28   7.8  
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897...    28   7.8  

>04_04_0416 +
           25042937-25043350,25044038-25044238,25044343-25044525,
           25044975-25045084,25045317-25045376,25045620-25045911,
           25046780-25046967,25047275-25048149,25048846-25049805,
           25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +1

Query: 370 IHDGNYDILPLK*RTPPDCFQLI*LS-----YHKACCPRCERHC 486
           +H GN+D  P+    PP+  +L+ LS       +   P C  HC
Sbjct: 565 VHSGNFDAFPVSVNLPPNTSKLVLLSGIPTQVGQVSIPGCIVHC 608


>08_02_0882 + 22227718-22227790,22227983-22228209
          Length = 99

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 514 INFHVFFLVNSVAHIWGNKPYDKTIKSAEN 425
           IN++VFFL N +  ++  K   K+ KSA N
Sbjct: 5   INYYVFFLDNRIYFVFSFKKGTKSPKSAAN 34


>03_05_0172 -
           21488504-21488752,21488862-21489611,21489691-21489789,
           21489862-21490776,21490847-21490976,21491438-21491583,
           21491801-21491896,21492521-21492613,21492702-21492755,
           21492897-21492956,21493046-21493171,21493283-21493366,
           21493444-21493587,21493667-21493963
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 220 DRSXFIEN*LCPRLRPQQNAILCQNXEAXKRFRKRTTS 107
           DR  F+     P L P Q+  LC + +   + RK  TS
Sbjct: 543 DRKSFLSVSASPHLSPMQDPTLCSSPKIHNKARKSITS 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,697
Number of Sequences: 37544
Number of extensions: 326331
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)