Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30566
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 173 2e-43
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 173 2e-43
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 173 2e-43
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 133 2e-31
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 133 2e-31
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 66 4e-11
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 66 4e-11
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 65 7e-11
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 65 7e-11
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 65 7e-11
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 64 9e-11
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 60 2e-09
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 47 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.028
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 36 0.028
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.037
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.20
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.20
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.20
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.20
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 30 1.8
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 29 3.2
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 29 4.3
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.4
AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical... 28 9.8
AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and... 28 9.8
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 173 bits (420), Expect = 2e-43
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Frame = +2
Query: 224 LSIILKRHYAE---KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYA 394
+S++ RH A K +F+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y
Sbjct: 26 VSLMQARHLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYE 85
Query: 395 DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXA 574
DIDNAPEEKARGITIN H+EY+T +RHY H DCPG ADYIKNMITG QM+GAIL A
Sbjct: 86 DIDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 145
Query: 575 TDG 583
TDG
Sbjct: 146 TDG 148
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 582 GVMPQTRGHLLLAXQIGXXHXGVVI 656
G MPQTR HLLLA Q+G +V+
Sbjct: 148 GPMPQTREHLLLARQVGVPLDNIVV 172
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 173 bits (420), Expect = 2e-43
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Frame = +2
Query: 224 LSIILKRHYAE---KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYA 394
+S++ RH A K +F+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y
Sbjct: 27 VSLMQARHLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYE 86
Query: 395 DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXA 574
DIDNAPEEKARGITIN H+EY+T +RHY H DCPG ADYIKNMITG QM+GAIL A
Sbjct: 87 DIDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
Query: 575 TDG 583
TDG
Sbjct: 147 TDG 149
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 582 GVMPQTRGHLLLAXQIGXXHXGVVI 656
G MPQTR HLLLA Q+G +V+
Sbjct: 149 GPMPQTREHLLLARQVGVPLDNIVV 173
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 173 bits (420), Expect = 2e-43
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Frame = +2
Query: 224 LSIILKRHYAE---KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYA 394
+S++ RH A K +F+R KPH NVGTIGHVDHGKTTLT+AITK+L+ A+ + Y
Sbjct: 27 VSLMQARHLAVPGGKAVFKRDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYE 86
Query: 395 DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXA 574
DIDNAPEEKARGITIN H+EY+T +RHY H DCPG ADYIKNMITG QM+GAIL A
Sbjct: 87 DIDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAA 146
Query: 575 TDG 583
TDG
Sbjct: 147 TDG 149
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 582 GVMPQTRGHLLLAXQIGXXHXGVVI 656
G MPQTR HLLLA Q+G +V+
Sbjct: 149 GPMPQTREHLLLARQVGVPLDNIVV 173
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 133 bits (321), Expect = 2e-31
Identities = 61/102 (59%), Positives = 75/102 (73%)
Frame = +2
Query: 278 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE 457
K + NVGTIGH+DHGKTTLT+AIT+V + A+ + +ID EEK RGITINVAH+
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG 102
Query: 458 YQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
Y++ R Y HTDCPG +D+IKNMI GT QMD A+L ATDG
Sbjct: 103 YESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 582 GVMPQTRGHLLLAXQIGXXHXGVVINQ 662
GVM QT+ HL+LA Q+G + + IN+
Sbjct: 144 GVMEQTKEHLILAKQVGVKNMAIFINK 170
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 133 bits (321), Expect = 2e-31
Identities = 61/102 (59%), Positives = 75/102 (73%)
Frame = +2
Query: 278 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE 457
K + NVGTIGH+DHGKTTLT+AIT+V + A+ + +ID EEK RGITINVAH+
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIG 102
Query: 458 YQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
Y++ R Y HTDCPG +D+IKNMI GT QMD A+L ATDG
Sbjct: 103 YESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 582 GVMPQTRGHLLLAXQIGXXHXGVVINQ 662
GVM QT+ HL+LA Q+G + + IN+
Sbjct: 144 GVMEQTKEHLILAKQVGVKNMAIFINK 170
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 65.7 bits (153), Expect = 4e-11
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYAD------IDNAPEEKA 424
N+ +GHVD GK+TL + L ++ A + G A +D EE+
Sbjct: 172 NLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 231
Query: 425 RGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
RG+T+++ ++T R D PG D+I NMITGT Q D AIL AT G
Sbjct: 232 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 65.7 bits (153), Expect = 4e-11
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKGYAD------IDNAPEEKA 424
N+ +GHVD GK+TL + L ++ A + G A +D EE+
Sbjct: 190 NLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 249
Query: 425 RGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
RG+T+++ ++T R D PG D+I NMITGT Q D AIL AT G
Sbjct: 250 RGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 64.9 bits (151), Expect = 7e-11
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Frame = +2
Query: 272 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 406
+ K H N+ IGHVD GK+T T + ++ AQ+ G YA + D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 407 APEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
E+ RGITI++A +++T + + D PG D+IKNMITGT Q D A+L G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 64.9 bits (151), Expect = 7e-11
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Frame = +2
Query: 272 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 406
+ K H N+ IGHVD GK+T T + ++ AQ+ G YA + D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 407 APEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
E+ RGITI++A +++T + + D PG D+IKNMITGT Q D A+L G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 64.9 bits (151), Expect = 7e-11
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Frame = +2
Query: 272 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 406
+ K H N+ IGHVD GK+T T + ++ AQ+ G YA + D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 407 APEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
E+ RGITI++A +++T + + D PG D+IKNMITGT Q D A+L G
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 64.5 bits (150), Expect = 9e-11
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Frame = +2
Query: 272 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 406
+ K H N+ IGHVD GK+T T + ++ AQ+ G YA + D
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62
Query: 407 APEEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAIL 562
E+ RGITI++A +++T + + D PG D+IKNMITGT Q D A+L
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVL 114
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 60.1 bits (139), Expect = 2e-09
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Frame = +2
Query: 278 KPHCNVGTIGHVDHGKTTLTAAI---TKVLSDLNL------AQKKGYAD------IDNAP 412
K H N+ +GHVD GK+T+ + T ++ L A++KG +D
Sbjct: 107 KEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTND 166
Query: 413 EEKARGITINVAHVEYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
EE+ +G T+ V ++TE+RH+ D PG ++ NMI G Q D A+L A G
Sbjct: 167 EEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 47.2 bits (107), Expect = 2e-05
Identities = 29/107 (27%), Positives = 43/107 (40%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 469
N G + HVDHGK+TL + ++ + QK+ +D E+ RGIT+ +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQ---MLDKLQVERERGITVKAQTAALRHR 100
Query: 470 QRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDGGNATNTRTF 610
D PG D+ + DG +L A G A F
Sbjct: 101 GYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANF 147
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLA--QKKGYADIDNAPEEKARGITINVAHVEYQ 463
N+G I HVD GKTT+T + + +++A KG D E+ RGIT+ A V
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVNLD 86
Query: 464 TEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
+ D PG D+ + +DG ++ + G
Sbjct: 87 WKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLN-LAQKKGYADI----DNAPEEKARGITINVAHV 454
N+G H+D GKTT+T I ++ + + +G D+ D E+ RGITI A
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSAAT 105
Query: 455 EYQTEQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
+ D PG D+ + +DGA+L G
Sbjct: 106 YVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 469
NV + HVDHGKT+ ++ + ++ +D+ +E+ RGIT+ + + E
Sbjct: 22 NVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE 81
Query: 470 QRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
D PG D+ + + D A+L +G
Sbjct: 82 PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/98 (24%), Positives = 43/98 (43%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 469
NV + HVDHGKT+ ++ + ++ +D+ +E+ RGIT+ + + E
Sbjct: 22 NVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCE 81
Query: 470 QRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
D PG D+ + + D A+L +G
Sbjct: 82 PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEG 119
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 36.3 bits (80), Expect = 0.028
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT- 466
N+G +GHVD GKTTLT I ++ S A +A GI N + + T
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGST--------SAFDAHATSTTTDGIRRNTLDLGFSTM 66
Query: 467 ---EQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
R DCPG + I+ ++ + D AI+ G
Sbjct: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 36.3 bits (80), Expect = 0.028
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYADI-------DNAPEEKAR 427
N+GTIGHV HGK+TL A + V + + N+ K GYA+ P
Sbjct: 42 NIGTIGHVAHGKSTLVKAFSGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCY 101
Query: 428 GITINVAHVEYQTEQ----------RHYGHTDCPGXADYIKNMITGTGQMDGAIL 562
+ + E+ RH DCPG + M+ G MD A L
Sbjct: 102 RSAGSSTPDRFPCERAGCGGEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFL 156
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.9 bits (79), Expect = 0.037
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Frame = +2
Query: 290 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT- 466
N+G +GHVD GKTTLT I ++ S A +A GI N + + T
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGST--------SAFDAHATSTTTDGIRRNTLDLGFSTM 66
Query: 467 ---EQRHYGHTDCPGXADYIKNMITGTGQMDGAIL 562
R DCPG + I+ ++ + D AI+
Sbjct: 67 TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIV 101
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 257 KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGIT 436
+ + +R + N+ I HVDHGK+TLT ++ + ++ D +E+ R IT
Sbjct: 10 RALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCIT 69
Query: 437 I 439
I
Sbjct: 70 I 70
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.20
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Frame = +2
Query: 281 PHC--NVGTIGHVDHGKTT-LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITIN--- 442
PH NV GH+ HGKTT L + + + A+ D EK RG +I
Sbjct: 129 PHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQP 188
Query: 443 VAHVEYQTEQRHY--GHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
V+ V + + Y D PG ++ M DG ++ A +G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 257 KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGIT 436
+ + +R + N+ I HVDHGK+TLT ++ + ++ D +E+ R IT
Sbjct: 10 RALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCIT 69
Query: 437 I 439
I
Sbjct: 70 I 70
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.5 bits (73), Expect = 0.20
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Frame = +2
Query: 281 PHC--NVGTIGHVDHGKTT-LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITIN--- 442
PH NV GH+ HGKTT L + + + A+ D EK RG +I
Sbjct: 4 PHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQP 63
Query: 443 VAHVEYQTEQRHY--GHTDCPGXADYIKNMITGTGQMDGAILXAXATDG 583
V+ V + + Y D PG ++ M DG ++ A +G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 272 RTKPHCNVGTIGHVDHGKTTLT 337
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKVHINIVVIGHVDSGKSTTT 24
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 257 KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 358
KQ+ KPH VG +G GK+++T ++ +++
Sbjct: 1352 KQLNVEIKPHEKVGIVGRTGAGKSSVTLSLFRII 1385
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 257 KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 358
KQ+ KPH VG +G GK+++T ++ +++
Sbjct: 1352 KQLNVEIKPHEKVGIVGRTGAGKSSVTLSLFRII 1385
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 251 AEKQIFERTKPHCNVGTIGHVDHGKTTLTAAI 346
A + ER P + +GHVDHGKTTL A+
Sbjct: 147 ASPKDLERRPPIVTI--MGHVDHGKTTLLDAM 176
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 467 EQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDGGNATNTRTFATCQXDWXXTXG 646
+ + +G TD P + + + TG G + A A N N TF +
Sbjct: 506 QDQGFGDTDAPSKSG-LGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWD 564
Query: 647 GGDKPSG 667
GG++P G
Sbjct: 565 GGERPRG 571
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +2
Query: 467 EQRHYGHTDCPGXADYIKNMITGTGQMDGAILXAXATDGGNATNTRTFATCQXDWXXTXG 646
+ + +G TD P + + + TG G + A A N N TF +
Sbjct: 506 QDQGFGDTDAPSKSG-LGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWD 564
Query: 647 GGDKPSG 667
GG++P G
Sbjct: 565 GGERPRG 571
>AL132860-11|CAB60517.1| 440|Caenorhabditis elegans Hypothetical
protein Y56A3A.13 protein.
Length = 440
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 348 LRYYLISIWHRKKVMQILTMPPRRRLEXSLLMW 446
+R+ +S+W+RK+ Q+L+ P L L W
Sbjct: 172 VRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHW 204
>AF069986-1|AAC39136.1| 440|Caenorhabditis elegans nitrilase and
fragile histidinetriad fusion protein NitFhit protein.
Length = 440
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 348 LRYYLISIWHRKKVMQILTMPPRRRLEXSLLMW 446
+R+ +S+W+RK+ Q+L+ P L L W
Sbjct: 172 VRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHW 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,507
Number of Sequences: 27780
Number of extensions: 323665
Number of successful extensions: 725
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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