Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30565
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   5.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   5.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   5.5  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   7.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   9.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   9.6  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 298 EKINLIFVGQRHNLLMFRGKNNQDGNADLCGLXIHTNVFVYYRKEMR 438
           E IN I++      L+   K N D    L  L    +VF+ Y KE++
Sbjct: 53  EGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQ 99


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 324 SNKN*IDLFFK--W*KSFIIKYHTNAHI 247
           SN N  D+F K  W KS I KY T A I
Sbjct: 835 SNDNDNDVFLKLHWSKSAIKKYETKASI 862


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 324 SNKN*IDLFFK--W*KSFIIKYHTNAHI 247
           SN N  D+F K  W KS I KY T A I
Sbjct: 835 SNDNDNDVFLKLHWSKSAIKKYETKASI 862


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
 Frame = +2

Query: 5   EYLE--AP*MDRKDPI--CHF---CGSCVYEVIDLDKQ 97
           ++LE  +P  DR D +  C +   CG C Y+++  DKQ
Sbjct: 164 DFLEVISPSEDRDDTLIKCPYFAKCGGCQYQMLSYDKQ 201


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 165 MFLINKYKMSLKTRQDKTSRCSR 233
           +FL++ Y +  K R+DK +  SR
Sbjct: 714 LFLLDNYLIMAKARKDKRTNASR 736


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 234 ISNIDLSCLVLF*DSFCIYLSGTFIIFY 151
           IS + ++C   F D+ C+ ++G  I+F+
Sbjct: 485 ISPMSITCGSSFADNVCVAVAGGLILFF 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,728
Number of Sequences: 5004
Number of extensions: 37234
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)