Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30564
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   2.4  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    28   5.6  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    28   5.6  
AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 368 KDIKKRSNLTPDAGISDASTCLHKMESKSSRKLYTDYVTRYKNEM 502
           KDI    N+T D  + DA    H+      + LYT    +Y+N++
Sbjct: 330 KDISSLDNVTDDMTLDDAERLNHRWNVNDYKNLYTS-TCKYENKV 373


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 221 SETDSEFIYTFL*VYR-FCESFSIIPLKINISNVP 120
           S TDS++I TFL  YR FC    +  L +   N+P
Sbjct: 676 SYTDSKYILTFLISYRSFCTPNDLFSLLLERFNIP 710


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 221 SETDSEFIYTFL*VYR-FCESFSIIPLKINISNVP 120
           S TDS++I TFL  YR FC    +  L +   N+P
Sbjct: 676 SYTDSKYILTFLISYRSFCTPNDLFSLLLERFNIP 710


>AC199170-6|ABO33264.1|  325|Caenorhabditis elegans Hypothetical
           protein T08D2.5 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 221 SETDSEFIYTFL*VYRFCESFSIIPLKIN 135
           S T SE   TF+ +Y  C++F + P+  N
Sbjct: 291 SSTSSEQCCTFIFIYLLCQNFLLFPISDN 319


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 158 SIIPLKINISNVPFHWFISKIAIVICV 78
           ++ P+ + +  + F WFIS I+ +ICV
Sbjct: 48  AVRPILLVLVTINFLWFISSISALICV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,177
Number of Sequences: 27780
Number of extensions: 316318
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)