Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30562
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    27   0.76 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   1.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   4.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   7.1  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    24   9.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   9.4  

>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 39  MASQTQ-GIQQLLAAEKRAAEKVSEAR 116
           M++QT  GIQQLL AEK A   V +AR
Sbjct: 1   MSAQTNSGIQQLLEAEKVARNIVEKAR 27


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 226 MGTREGVAXKIDAETKVKIEEMNKMVQTQKE 318
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 112 QGKRKAKRLKQAKEEAQDE 168
           +GK K K LK+ K E +DE
Sbjct: 215 KGKEKQKELKKGKREKKDE 233


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 378  VDVEFGFXVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGID 256
            VDVE    V   I++ F+DR +L + H ++ + D N  L +D
Sbjct: 1391 VDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLD 1432


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 348 HQIQDVFDDRLLLCLDHFVHLFDLN 274
           H +QD  D R +LC D    +F+++
Sbjct: 152 HDLQDPNDKRTILCDDKLKSVFEVD 176


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 100 KSARQGKRKAKRLKQAKEEAQDE 168
           K  R+ + K K+ K+  EEA+DE
Sbjct: 314 KPPRKSRFKRKKKKEQPEEAEDE 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,912
Number of Sequences: 5004
Number of extensions: 20899
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)