Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30562
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     33   0.10 
05_05_0321 + 24091997-24092530                                         29   0.95 
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   1.3  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    28   2.9  
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148...    27   5.1  
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175...    27   5.1  
06_03_0011 + 15369132-15369379,15370283-15370556                       26   8.9  

>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 124 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAXKIDAETKVKIEEMNKMV 303
           K+ RL+QAKEEA+ E+               A+  G       +++ ET  KI ++ +  
Sbjct: 31  KSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDSGANVKRLEQETAEKIAQLKQQA 90

Query: 304 QTQKEAVIKDVLNLVYDXK 360
            +    VI+ +L  V   K
Sbjct: 91  ASISPEVIQMLLRHVTTVK 109



 Score = 31.5 bits (68), Expect = 0.24
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +3

Query: 36  DMASQTQGIQQLLAAEKRAAEKVSEAR*AKS 128
           D   +  GIQQLLAAE+ A + V+ AR AKS
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKS 32


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 44  ESDPRNPTASSC*KTRCGESQRGKVSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 223
           E+    P++SS  +    E+   +  +++ A +   RRL+ +   +  S  GS   +  +
Sbjct: 78  ENGQARPSSSSE-QEEAAEAASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLLN 136

Query: 224 TWVPGKVLRXRSMPRP 271
            +VPG + R  + PRP
Sbjct: 137 FYVPGLLTRSMTTPRP 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 184 VCTFQLHLEPPPWPALGVSLF 122
           V  FQ  + PPPWPA G + F
Sbjct: 231 VAAFQSRMMPPPWPARGKAEF 251


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 72  LAAEKRAAEKVSEAR*AKSETPKAGQGGGSR*S*KVQTGA*KAVQRI 212
           LAA +R++   S A  A ++ P  G+GGG     K   GA  A +R+
Sbjct: 5   LAASRRSSSSSSVAAAAAAKRPAVGEGGGGG-GGKAAAGAAAAKKRV 50


>04_04_1379 +
           33113374-33113529,33114046-33114143,33114811-33114880,
           33116668-33116800,33116981-33118940,33119016-33119076,
           33119554-33120057
          Length = 993

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 161 KMKLKSTDRSVKGSSKNLKPSTWVPGKVLRXRSMPRPKL 277
           K  LKS D + K   +N+K  T +  +  R RSM R +L
Sbjct: 299 KFNLKSADAAHKQHLENVKKITKLEAECQRLRSMVRKRL 337


>02_05_0429 -
           28916583-28916882,28917286-28917408,28917484-28917561,
           28917889-28917950,28918260-28918347
          Length = 216

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +3

Query: 57  GIQQLLAAEKRAAEKVSEAR 116
           GIQQLLAAE+ A + V+ AR
Sbjct: 9   GIQQLLAAEQEAQQIVNAAR 28


>06_03_0011 + 15369132-15369379,15370283-15370556
          Length = 173

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 40  WRVRPKESNSF*LLKNALRRKSARQGKRKAKRLKQAKEEAQDEV 171
           WR+R  +       + A    S+  GKR+ +R++    E +D+V
Sbjct: 125 WRLRHSDVGGVLQRRRAAAATSSYVGKRRRRRIRWRSTELRDDV 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,228
Number of Sequences: 37544
Number of extensions: 147677
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)