Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30558
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    31   0.39 

>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +2

Query: 290 LFSVFAMVVIFFLKTKKKTILIFSDGHYK**IITYLAYYTMTFYAA*LPIRIEYLCTGQC 469
           +  +  +V+I+FLKT K++    ++ H        +A  T+TF  A +P+ I YL     
Sbjct: 233 ILPIVTIVLIYFLKTMKRSTASNNNNHNA-RSTKMVALVTVTFLLATVPLGITYLYQHTD 291

Query: 470 F----QFFCS 487
           F     FFCS
Sbjct: 292 FSFGISFFCS 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,523
Number of Sequences: 27780
Number of extensions: 203967
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)