Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30552
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   1.5  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   3.5  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   4.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   6.1  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   6.1  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 274 CPRATYINEHKFPKKH*FVDGHDAVYXIPKDRS--SSMGFISK 396
           C +   + +  FP+++  V+G D+ +  PK R   S +GF  K
Sbjct: 39  CVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYSGVGFYVK 81


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 320 CFFGNLCSLIYVALGHHSQQMVRIGFNDVSGTTAPSTTLSR 198
           C++GN+  L+Y+ +   S+++  + ++   GT A S    R
Sbjct: 168 CYWGNILLLVYIWIFPESRRLFILSYSISYGTLAWSVVAWR 208


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 300 LVNICCPWASFPAD 259
           +++  CPWA FP D
Sbjct: 393 ILDTTCPWAGFPVD 406


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 323 DLWTATMLSTIFQKIDHHRWALFLNL 400
           DLW  T+ +    +ID+++W LF  L
Sbjct: 336 DLWKWTIENPFGFQIDNYKWKLFNTL 361


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 303 QIPKKTLICGRPRCCLXYSKR*IIIDGLY 389
           ++ ++ +  G+PR    YSK  ++I+GLY
Sbjct: 309 RVLREVISQGQPRTHRPYSKILVVIEGLY 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,608
Number of Sequences: 5004
Number of extensions: 27914
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)