Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30552
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    28   3.3  
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121...    27   4.4  

>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +2

Query: 218 ALSCQTHH*NQFSPSAGNDAQGQHILTSTNSQKNTDLWTATMLSTIFQKIDHHRWALF 391
           A S QT+    F P  G   Q QH    T +  +TD   A  +ST F       W+LF
Sbjct: 734 ASSDQTYGIYDFRPDNGY-IQDQHAALRTRNFYHTDDAFADSISTDFSDATSSEWSLF 790


>01_07_0302 -
           42611150-42611812,42611881-42611961,42612064-42612150,
           42612283-42612378,42612479-42612543,42612919-42612975,
           42613066-42613147,42613235-42613327,42613714-42613785,
           42613881-42613985
          Length = 466

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 278 GHHSQQMVRIGFNDVSGTTAPSTTLSRPARSTSTESNEQSQ 156
           G HS+Q ++        +T P  T++ PA+S   +  E  +
Sbjct: 299 GKHSKQQIKSPEEPAGQSTRPDVTIAAPAKSELLDGKEMKK 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,372,378
Number of Sequences: 37544
Number of extensions: 162531
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)