Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30552
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical...    28   3.0  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   5.3  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF025454-1|AAC71152.2|  378|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AL132948-43|CAB61061.2|  511|Caenorhabditis elegans Hypothetical
           protein Y39B6A.41 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 46  SMFVSILLNRFLFYVFSRLI 105
           +M  S+LLNRF FYV   LI
Sbjct: 104 AMLTSLLLNRFEFYVIGHLI 123


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 233 SGTTAPSTTLSRPARSTSTESNEQS 159
           + TTAPST+ + P+ S+ST S+  S
Sbjct: 491 TSTTAPSTSTTGPSSSSSTPSSTAS 515


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 233 SGTTAPSTTLSRPARSTSTESNEQS 159
           + TTAPST+ + P+ S+ST S+  S
Sbjct: 491 TSTTAPSTSTTGPSSSSSTPSSTAS 515


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 227 TTAPSTTLSRPARSTSTESNEQ 162
           TT P+TT +  +  TST SNEQ
Sbjct: 442 TTPPTTTQTSSSNQTSTISNEQ 463


>AF025454-1|AAC71152.2|  378|Caenorhabditis elegans Hypothetical
           protein F34D6.1 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 344 ASWPST-NQCFFGNLCSLIYVALGHHSQQMVRIGFNDVSGTTAPSTTLSRPARSTSTE 174
           A+W +T N   FGN CSLI      +S+ +  I  + +    +P   LS  A  +  E
Sbjct: 264 ATWVTTENIKIFGNCCSLILYETQFNSEDLNMILKDWMEAPASPLVVLSLEAAESIDE 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,800
Number of Sequences: 27780
Number of extensions: 156183
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)