Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30552
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.083
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.2  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   9.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.083
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 275  HHSQQMVRIGFNDVSGTTAPSTTLSRPARSTSTESNEQSQ 156
            H +Q +V    ++V+  T   TT+  P +  S + ++QSQ
Sbjct: 943  HSAQSVVASSASNVTNVTTNLTTILPPVKVQSQQQSQQSQ 982


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 35  SAVNRCLYRYC*IDFCFTFLAV 100
           SA+N C+Y     DF F F ++
Sbjct: 55  SAINPCIYALFSKDFRFAFKSI 76


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 35  SAVNRCLYRYC*IDFCFTFLAV 100
           SA+N C+Y     DF F F ++
Sbjct: 503 SAINPCIYALFSKDFRFAFKSI 524


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 28 ICFSCESMFVSILLNRFLFYVF 93
          ICF C+ +  +  L R   Y+F
Sbjct: 24 ICFVCKDITSTSALYRLKLYLF 45


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 331  DGHDAVYXIPKDRSSSM 381
            D H+    IPKD+S S+
Sbjct: 1480 DNHNEKLHIPKDKSVSV 1496


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 92  LAV*YSFSGSFKKKYE 139
           L+  Y  +G +KK+YE
Sbjct: 101 LSAKYDSTGEYKKRYE 116


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 92  LAV*YSFSGSFKKKYE 139
           L+  Y  +G +KK+YE
Sbjct: 101 LSAKYDSTGEYKKRYE 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,231
Number of Sequences: 438
Number of extensions: 1761
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)