Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30551
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 217 1e-57
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 187 1e-48
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 93 2e-20
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 34 0.019
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 27 2.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 3.8
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 3.8
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 3.8
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 6.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.7
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 8.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 8.7
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 217 bits (529), Expect = 1e-57
Identities = 107/147 (72%), Positives = 127/147 (86%)
Frame = +3
Query: 93 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 272
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 273 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQP 452
YGLVV+VLI+G L++ + LY GFI LGAGL+V +GLAAGFAI IVGDA VRGTAQQP
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQP 124
Query: 453 KLFVGMILILIFAEVLGLYGLIVAIYL 533
+LFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 125 RLFVAMILILIFAEVLGLYGLIVALLL 151
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 187 bits (456), Expect = 1e-48
Identities = 87/147 (59%), Positives = 113/147 (76%)
Frame = +3
Query: 93 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 272
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 273 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQP 452
YGLV++VLIAG + +Y L+ GFIHL AGLAV +G+AAG+AI +VGD V+ +Q
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQD 126
Query: 453 KLFVGMILILIFAEVLGLYGLIVAIYL 533
++FV M+LILIFAEVLGLYGLIV + L
Sbjct: 127 RIFVSMVLILIFAEVLGLYGLIVGLIL 153
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 93.5 bits (222), Expect = 2e-20
Identities = 47/147 (31%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Frame = +3
Query: 111 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 290
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 291 VLIAGALQE--PANY----PLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQP 452
++ + + + PA + Y GF G+ V L G + I G ++ AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 453 KLFVGMILILIFAEVLGLYGLIVAIYL 533
LFV ++++ IF VLGL+GLIV + +
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGLIVGLLI 191
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 33.9 bits (74), Expect = 0.019
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +3
Query: 237 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIV 416
II +AG+IA + +++ IAG + G ++ G L + LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246
Query: 417 GDASVRGT 440
GD V T
Sbjct: 247 GDVCVSNT 254
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 96 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 275
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 276 GLVVAVLIAGAL 311
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 2.2
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +3
Query: 72 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 236
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 237 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 338
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = -2
Query: 533 QVDGDDKSVKTQYFSENKNKNHSDE*LRLLSSTTHACISHDAYGETGSQTRESYSQTSTQ 354
Q +G++KS K FSE+ + NH + L ++ + I + S T E +
Sbjct: 329 QSNGNEKSSKYNVFSESAHGNH--QVLSFSPGSSPSFIEQPSPISPTSTTSEDTNTLEED 386
Query: 353 VDEPFVKGVVGWLL 312
D+ +K + G L+
Sbjct: 387 TDDQSIKWIRGALI 400
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 469 IPTNNLGC*AVPRTLASPTMLMAKPAARPENLTAKPAPKWMNP 341
IP L P TLASP L PAA A+P P +P
Sbjct: 254 IPPQALPANGTPNTLASPVTL---PAANSAVQNAQPVPMTSSP 293
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 511 P*RPNTSAKIRIRIIPTNNLGC*AVPRTLASPTMLMAKPAARPENLTAKPAPKWMNP 341
P RP ++A ++ PT +VP ++P M P+A P L A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 350 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 237
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 327 YPLYKGFIHLGAG----LAVRFSGLAAGFAISIVGDASVRG 437
Y L K ++ + G +A+ FSG++AG+ +I G G
Sbjct: 359 YDLLKEYVSISCGRLFAVALLFSGMSAGYVCTIAGQIVSEG 399
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 51 TGPKNCDDYLHTL 13
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 417 PRCLWRNRQPDQRILQPNQ 361
PRCLW +Q +++PN+
Sbjct: 582 PRCLWTGKQVFTVLMKPNR 600
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 51 TGPKNCDDYLHTLTP 7
TG KNCDD+L +P
Sbjct: 402 TGNKNCDDHLRDKSP 416
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 496 YWVFTDLSSPSTCTQNKRPEHTPLPSP 576
YW +T +SP+ +N R P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,994
Number of Sequences: 5004
Number of extensions: 57423
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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