Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30551
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 208 3e-54
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 208 3e-54
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 208 3e-54
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 208 3e-54
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 192 1e-49
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 192 1e-49
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 81 6e-16
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 81 6e-16
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.12
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.28
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.28
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.49
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 2.0
Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.5
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 3.5
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 3.5
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.5
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 3.5
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.5
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 4.6
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 28 4.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.1
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 6.1
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 6.1
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 6.1
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 6.1
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 208 bits (507), Expect = 3e-54
Identities = 104/146 (71%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
Frame = +3
Query: 99 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 278
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 279 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQPK 455
LVVA+++ G + A Y L KGF HL AGL GL AG+AI IVGDA VRGTAQQP+
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 456 LFVGMILILIFAEVLGLYGLIVAIYL 533
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 208 bits (507), Expect = 3e-54
Identities = 104/146 (71%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
Frame = +3
Query: 99 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 278
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 279 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQPK 455
LVVA+++ G + A Y L KGF HL AGL GL AG+AI IVGDA VRGTAQQP+
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 456 LFVGMILILIFAEVLGLYGLIVAIYL 533
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 208 bits (507), Expect = 3e-54
Identities = 104/146 (71%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
Frame = +3
Query: 99 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 278
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 279 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQPK 455
LVVA+++ G + A Y L KGF HL AGL GL AG+AI IVGDA VRGTAQQP+
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 456 LFVGMILILIFAEVLGLYGLIVAIYL 533
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 208 bits (507), Expect = 3e-54
Identities = 104/146 (71%), Positives = 117/146 (80%), Gaps = 1/146 (0%)
Frame = +3
Query: 99 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 278
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 279 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQPK 455
LVVA+++ G + A Y L KGF HL AGL GL AG+AI IVGDA VRGTAQQP+
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPR 132
Query: 456 LFVGMILILIFAEVLGLYGLIVAIYL 533
LFVGMILILIF+EVLGLYG+IVA+ L
Sbjct: 133 LFVGMILILIFSEVLGLYGMIVALIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 192 bits (469), Expect = 1e-49
Identities = 92/147 (62%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
Frame = +3
Query: 96 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 275
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 276 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQP 452
GLVVAV+++G ++ ANY + F GL GL AG+AI I GDA VR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 453 KLFVGMILILIFAEVLGLYGLIVAIYL 533
++FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 192 bits (469), Expect = 1e-49
Identities = 92/147 (62%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
Frame = +3
Query: 96 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 275
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 276 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRGTAQQP 452
GLVVAV+++G ++ ANY + F GL GL AG+AI I GDA VR +QQP
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVRALSQQP 139
Query: 453 KLFVGMILILIFAEVLGLYGLIVAIYL 533
++FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 140 RMFVGMILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 81.0 bits (191), Expect = 6e-16
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Frame = +3
Query: 120 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 299
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 300 AGALQE--PANYP------------LYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRG 437
G L E + P L G++ G GL V S L G A+ IVG +
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 438 TAQQPKLFVGMILILIFAEVLGLYGLIVAI 527
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 81.0 bits (191), Expect = 6e-16
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Frame = +3
Query: 120 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 299
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 300 AGALQE--PANYP------------LYKGFIHLGAGLAVRFSGLAAGFAISIVGDASVRG 437
G L E + P L G++ G GL V S L G A+ IVG +
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVGSGAAIA 173
Query: 438 TAQQPKLFVGMILILIFAEVLGLYGLIVAI 527
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 174 DAANPALFVKILIIEIFASAIGLFGMIIGI 203
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 233 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 316
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 332 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 234
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 332 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 234
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 10 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 168
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 169 ELPSQE 186
++P +E
Sbjct: 343 KMPDRE 348
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 533 QVDGDDKSVKTQYFSENKNKNHSD---E*LRLLSSTTHACISHDAYGETGSQTRE 378
++DG++ K + K KNH+D E LL ST+ + ++ D + TR+
Sbjct: 511 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKRSSSSGTTRK 565
>Z75955-5|CAB00119.2| 285|Caenorhabditis elegans Hypothetical
protein R07B7.10 protein.
Length = 285
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 270 IYGLVVAVLIAGALQEPANYPLYKG----FIHLGAGLAVRFSGLAAGFAISIVGDASVRG 437
IY +V ++ QE Y LYKG FI GA ++ F+G AG GD++V
Sbjct: 34 IYKGIVDCMVKTMKQESV-YGLYKGMFVPFISTGALHSLLFAGYGAGLKFLNPGDSNVMA 92
Query: 438 TAQQPKLFVGMILILIFAEVLGLYGLIVAIYL 533
P + ILI L G ++ + L
Sbjct: 93 RKDLP---MSDILIASICGTLVQVGPVIPVEL 121
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 263 YCHLRSGRGCPDCWCPPGASQ 325
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 245 CRHGGYYCHLRSGRGCPDCWCPPGASQ 325
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 533 QVDGDDKSVKTQYFSENKNKNHSD---E*LRLLSSTTHACISHDAYGE 399
++DG++ K + K KNH+D E LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 263 YCHLRSGRGCPDCWCPPGASQ 325
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -2
Query: 533 QVDGDDKSVKTQYFSENKNKNHSD---E*LRLLSSTTHACISHDAYGE 399
++DG++ K + K KNH+D E LL ST+ + ++ D + E
Sbjct: 557 ELDGEESQKKNEKKKAKKRKNHNDYLPESDPLLRSTSRSSVNSDKFDE 604
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 263 YCHLRSGRGCPDCWCPPGASQ 325
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 392 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 216
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 215 PH 210
H
Sbjct: 82 DH 83
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 213 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 338
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 225 IMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVR 377
+++ ++P + I+ + L + L+ GA+ N+ L + IH+GA L +R
Sbjct: 501 MIRMMLPYLPHHILTVQDLNLNTLLHGAINSE-NFELVEFLIHMGAPLQIR 550
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 266 CHLRSGR-GCPDCWCPPGASQLPP 334
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 245 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 370
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 245 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 370
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 440 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 264
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 263 N 261
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 440 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 264
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 263 N 261
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 440 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 264
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 263 N 261
N
Sbjct: 669 N 669
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,450
Number of Sequences: 27780
Number of extensions: 349545
Number of successful extensions: 1108
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -