Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30549
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    30   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.60 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   1.1  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    27   1.8  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    27   1.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   4.3  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   4.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   4.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.4  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    24   9.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   9.8  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 460 EMVHSQKLSIAFQXSSPPSIDATTPGSDNSGPI-FATRIRRCTSQ 329
           E+++ +KL IAF  + PPS     P   N G   +  R R C S+
Sbjct: 372 EVINLEKLQIAFTSNEPPSGSGVLPFLTNGGCYSYICRSRSCPSK 416


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
 Frame = -2

Query: 417  RHRQASTPRRQAATIPV--LSLRPGYGAAPPKRGRQRAYAPPCPA----SVHNGGTSS-- 262
            R + A+ P+  A T P   +S+ P   A P   G   A  PP PA    SV N G  S  
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSAL 1752

Query: 261  LAQLLSGAGTSRSIRAQSAPAPDGR 187
            L Q+ +G    +++    +    GR
Sbjct: 1753 LQQIHTGTRLKKTVTTDKSKPIAGR 1777


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 439 LSIAFQXSSPPSIDATTPGSDNSGPIFATRIRRCT 335
           L I F    PP +DAT   S   G  F T+   CT
Sbjct: 637 LVILFHELPPPGLDATAYSSWEKGDNFVTKKNVCT 671


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = -3

Query: 338 HLPSGADSERMLRRVQLVSTMVAPRRWLSSYPVQVLPEASVPSQHLHQTEGEAFSATIHP 159
           H+   AD+   L+   L++T     +  +   VQ+  E SVP  H+ + +G+  SAT   
Sbjct: 101 HIKISADTFLPLKNKPLITTKFTVLK--NRNAVQL--EWSVPVAHIFEEDGQISSATFEA 156

Query: 158 VIKVWVNRLD 129
            I  ++++++
Sbjct: 157 EISKYLSQIE 166


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 102 ANLTWGLRTVEAVYPDFDDWVNRGRERLTFRLVQVLTGHGCFGKYLHRIG 251
           AN+  G+RT  + + D+DD V+ G + +  R +  L   G   K   R+G
Sbjct: 238 ANIHAGIRTPISSFSDYDDDVDCGFKIIEAREIDDLGIDGIVKKIRDRVG 287


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 368 SYLCDQDTALHLPSG-ADSERMLRRVQLVSTMVAPRRWLSS 249
           +Y  D  T L   SG + S+++  +V     +  P+RW SS
Sbjct: 75  AYTGDSTTDLDSKSGHSSSQKLSNKVSSALKLTIPKRWRSS 115


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 309 YAPPCPASVHNGGTSSLAQLLSGAGTSRSIRAQSAPA 199
           Y  P P+S+   G  +++Q+   AG    + AQS  A
Sbjct: 77  YTSPSPSSISQAGPFAISQVFGPAGRLYFLWAQSTYA 113


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 354 PGYGAAPPKRGRQRAYAPP-CPASVHNGGTSSL 259
           PGY A P   G   A APP  P S +   +S+L
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNL 572


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 429 PSXTRHRQASTPRRQAATIPVLSLRPGYG 343
           P  +R+        + AT P L L PGYG
Sbjct: 62  PPTSRYIMTINTFDENATFPALDLSPGYG 90


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 87   WSRRLANLTWGLRTVEAVYP 146
            W   LA  TWG  T+   YP
Sbjct: 1876 WCEHLAQNTWGDSTISLEYP 1895


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 374 FRSYLCDQDTALHLPSGADSERMLRRVQLV 285
           FR YL DQD   ++ +GA  +R    ++ V
Sbjct: 349 FRGYLADQDCRWNVIAGAVDDRTEEEMKTV 378


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 333 PKRGRQRAYAPPCPASVHNGGTSSLAQLLSGAGTSRSIRAQSAPAPDG 190
           P         PP PAS  + GTSS + LLS   TS S    ++  P G
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSS-SPLLS---TSTSCTTSTSIPPTG 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,422
Number of Sequences: 5004
Number of extensions: 40454
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)