Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30540
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 180 1e-46
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 75 1e-14
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 70 3e-13
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 56 3e-09
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 55 8e-09
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 29 0.62
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 180 bits (438), Expect = 1e-46
Identities = 80/165 (48%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
Frame = +2
Query: 71 MATDNLTALLYKPNDLRLVQTPIPEISDD-EVLLRMDCVGICGSDVHYWQKGQCGHFVLE 247
MA +L K D + P ++DD +V + + GICGSDVHYW++G G F+L+
Sbjct: 1 MAPAEKAFVLRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILK 60
Query: 248 EPMIMGHEASGVVAKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLCPDMIFCATP 427
+PMI+GHE++GVV ++G V +L GD VA+EPG CR C++C++GRY+LCP M F ATP
Sbjct: 61 KPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATP 120
Query: 428 PVHGNLVRYYKHAADFCFKLPDHVTMEEGALLEPLAVGIHACKRG 562
P G L YY DFC KLP +++EEGAL EP++V +HA RG
Sbjct: 121 PYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRG 165
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 74.5 bits (175), Expect = 1e-14
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = +2
Query: 107 PNDLRLVQTPIPEISDDEVLLRMDCVGICGSDVHYWQKGQCGHFVL--EEPMIMGHEASG 280
P +++ + P+ E DEVL+ + G+C +D+H Q G + L + P+I GHE +G
Sbjct: 18 PENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAG 73
Query: 281 VVAKIGSKVKNLTVGDRVAIE-PGVPCRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYY 457
VV K+G+ V L +GDRV ++ C CE+C +CP I + V G Y
Sbjct: 74 VVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPH-IQLSGYTVDGTFQHYC 132
Query: 458 KHAADFCFKLPDHVTMEEGA 517
A +P+ V +E A
Sbjct: 133 IANATHATIIPESVPLEVAA 152
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 69.7 bits (163), Expect = 3e-13
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Frame = +2
Query: 107 PNDLRLVQTPIPEISDD-EVLLRMDCVGIC-GSDVHYWQKGQCGHFVLEEPMIMGHEASG 280
P ++++ + P P I+ +V+++ IC GSD H + G +E+ I+GHE+ G
Sbjct: 45 PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG---IEKGAILGHESCG 101
Query: 281 VVAKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLCPDMIFCATPPV-----HGNL 445
+VA+ G +V NL +GDRV I + C C FCK Y C V H +
Sbjct: 102 IVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDVNYGSHHSAI 161
Query: 446 VRYYKHAADF----------------CFKLPDHVTMEEGALL-EPLAVGIHACKRG 562
Y K D C KLPD + EG + + L +HAC G
Sbjct: 162 FGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIPDSEGLFMSDVLCTSLHACTLG 217
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 56.4 bits (130), Expect = 3e-09
Identities = 32/98 (32%), Positives = 53/98 (54%)
Frame = +2
Query: 107 PNDLRLVQTPIPEISDDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVV 286
P + VQ P + EV +++ G+C +D Y G+ + P+I+GHE +G+V
Sbjct: 24 PLSIENVQVFPPRVH--EVRIKIVNSGVCHTDA-YTLSGKDPEGLF--PVILGHEGAGIV 78
Query: 287 AKIGSKVKNLTVGDRVAIEPGVPCRYCEFCKTGRYHLC 400
+G +V + VGD V C+ C+FCK+G+ +LC
Sbjct: 79 ESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLC 116
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 54.8 bits (126), Expect = 8e-09
Identities = 27/81 (33%), Positives = 45/81 (55%)
Frame = +2
Query: 158 EVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVVAKIGSKVKNLTVGDRVA 337
EV +++D +C +D Y G P+++GHE +G+V IG V N+ GD V
Sbjct: 36 EVRVKVDWSAVCHTDA-YTLSGVDPEGAF--PIVLGHEGAGIVESIGEGVINVRPGDHVI 92
Query: 338 IEPGVPCRYCEFCKTGRYHLC 400
+ C+ C+FC++G+ +LC
Sbjct: 93 LLYTPECKECKFCRSGKTNLC 113
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 28.7 bits (61), Expect = 0.62
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 242 LEEPMIMGHEASGVVAKIGSKVKNLTVGDRV 334
L+ P++ G + +G++ K+G V+ GD V
Sbjct: 58 LQLPVVPGSDGAGIIEKVGEDVEGFEKGDSV 88
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 502 GHVIRKLEAKIGCVLVISDEVSVYWGRGAED 410
GH ++ +EAK G + I + SV G+G D
Sbjct: 211 GHTLKDMEAKSGAKIAIRGKGSVKEGKGRSD 241
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 430 STRKPRQILQARSRFLLQAS*SRDHGRRSATGAPRGGHSRVQEGR 564
+T+K IL+ ++ L S DHG+R + R + Q+ R
Sbjct: 340 ATQKSVSILKGHNKALSNVSLQEDHGKRRNLKSLRSSRNLHQQSR 384
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 342 SPACRVGTASSVRQDDTTYAPT*SSAPRPQYT-ETSSDITS 461
S + V ++SSV+ +T + SSA PQ T TSS++ S
Sbjct: 465 SSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVS 505
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,732
Number of Sequences: 5004
Number of extensions: 49804
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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