Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30540
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.53 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   0.53 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.53 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    24   0.92 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.6  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  QIT*PLCCTNQMICVWYKHRSLKY 149
           +I   LC T + I +W+++R +K+
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKW 63


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  QIT*PLCCTNQMICVWYKHRSLKY 149
           +I   LC T + I +W+++R +K+
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKW 63


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  QIT*PLCCTNQMICVWYKHRSLKY 149
           +I   LC T + I +W+++R +K+
Sbjct: 302 EIAHALCLTERQIKIWFQNRRMKW 325


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  QIT*PLCCTNQMICVWYKHRSLK 146
           +I   LC T + I +W+++R +K
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMK 62


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 414 SAPRPQYTETSSDI 455
           S P PQY  TSS I
Sbjct: 436 SQPSPQYPSTSSHI 449


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 266  HEASGVVAKIGSKVKNLTVGDRVAIEP 346
            H A  VVA   S V N+T      + P
Sbjct: 943  HSAQSVVASSASNVTNVTTNLTTILPP 969


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 152 QIFQGSVFVPNANHLVCTTKRLGYL 78
           ++++ S+FVP   + +  +KR+  L
Sbjct: 135 ELYEESLFVPYITNFIIYSKRMDVL 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,980
Number of Sequences: 438
Number of extensions: 3437
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)