Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30539
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0440 + 3487874-3487925,3488032-3488181,3488350-3488477,348...    30   1.8  
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350...    29   3.2  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    29   5.6  

>05_01_0440 +
           3487874-3487925,3488032-3488181,3488350-3488477,
           3489411-3489551
          Length = 156

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 CFMAEISSAVLPCGLRRRPTTSKIVISRNIRQPALNS 332
           C + E +  V+PC +RR+PT  + V   +I   A NS
Sbjct: 14  CALPEPAGTVIPCTVRRKPTGPRTVSVTDIASVADNS 50


>05_01_0442 -
           3500849-3500866,3500950-3501027,3501260-3501352,
           3501419-3501536,3502815-3502945,3503027-3503299,
           3504825-3504882,3505065-3505388,3507404-3507852,
           3509514-3509554,3510263-3510412,3510519-3510906
          Length = 706

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 222 CFMAEISSAVLPCGLRRRPTTSKIVISRNIRQPALNS 332
           C + E +  V+PC +RR+PT  + V    +   A NS
Sbjct: 126 CALPEPAGTVIPCTVRRKPTGPRTVSITGVASVADNS 162


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 705 RSYMKTVCWVKIRRYYQGTS 646
           R YM+++ W  +RRY+QG S
Sbjct: 340 RQYMRSLEWTYLRRYFQGGS 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,240,686
Number of Sequences: 37544
Number of extensions: 369641
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)