Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30538
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   158   5e-40
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    29   0.50 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   0.66 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   3.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   4.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   4.6  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   8.1  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    25   8.1  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    25   8.1  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  158 bits (383), Expect = 5e-40
 Identities = 73/138 (52%), Positives = 98/138 (71%)
 Frame = +1

Query: 73  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 252
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 253 GKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPID 432
           GKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +LP+ 
Sbjct: 81  GKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLA 140

Query: 433 DSVEGLTGNLFEVYLKPY 486
           D+VEGLTG+LF+VYLKPY
Sbjct: 141 DTVEGLTGSLFDVYLKPY 158


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 94  SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 267
           S +D+S  + RR     R + + A S D++  V A S       +L  G+T+       K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302

Query: 268 ETVCIVLSD 294
             VC+ L+D
Sbjct: 303 AAVCVALND 311


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 211
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -3

Query: 486 VRLQVYFE*IASKTLN*IINWQYVHSFSIFH*RTRSYGYHIRKTHTKVVSHDTVHPNFLI 307
           ++LQ  F     +  N + +W Y H FS       S  Y+++  H +VV   ++ P F +
Sbjct: 532 LKLQGIFSSSFQQVSNNMYSWIYDHVFSSSDHAYESLIYYMKTGHKQVVQSFSIFPVFRV 591


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 119 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANA 262
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 412 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 302
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 97  PD-DLSTAILRRKDRPNRLIVEEAVSD 174
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 70  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 228
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 157 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 270
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 151 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 279
           + +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 16/74 (21%), Positives = 33/74 (44%)
 Frame = +1

Query: 103 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 282
           D++   +   DRP    + + V D   ++A  + K+E+ +  +      K ++ K+ V  
Sbjct: 625 DMAALGVSFNDRPQGSALVKLV-DAEELIAAREQKLEEERAKQAKKAQAKAEQEKKQVER 683

Query: 283 VLSDDNCPDEKIRM 324
           V+     P E  +M
Sbjct: 684 VMKGKTSPSEMFKM 697


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 442 QLNHQLAVCALV---FHISLKDTELWI 371
           QLN ++  C ++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 442 QLNHQLAVCALV---FHISLKDTELWI 371
           QLN ++  C ++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,335
Number of Sequences: 5004
Number of extensions: 38263
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)