Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30521
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 31 0.13
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 1.6
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 26 2.7
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.6
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 4.8
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 4.8
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 6.3
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 25 6.3
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 30.7 bits (66), Expect = 0.13
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +1
Query: 64 IQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG 243
IQQLL AEK A V +ARQ +++ K + + D + K S
Sbjct: 9 IQQLLEAEKVARNIVEKARQHRTQRLKDARLEAK----REIDEYASKKEEEFKKSESQAS 64
Query: 244 *GVAAKIDAETKVKIEEMNKMVQT--QK--EAVIKDVLNLVYDIK 366
G+ ++ +AE+K ++++ ++T QK + V+ +L++ ++K
Sbjct: 65 -GIYSQAEAESKKQVQDTFASIETSSQKNSDKVVDAILSITCNVK 108
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -2
Query: 390 AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 253
A VDVE V I++ F+DR +L + H ++ + D N L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 2.7
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 85 EKRAAEKVSEARQAKS-ETPKAGQGGGSSMKLKSTDRSVKGSSK-NLKPSTWVPG*GVAA 258
EK+ A VS++ K +T AG+G + K KST K + N+ V G G AA
Sbjct: 214 EKKTAVDVSDSVNGKKRKTEPAGEGEQTEKKSKSTKTYPKQVLEGNVTVQDKVKGDGPAA 273
Query: 259 K 261
K
Sbjct: 274 K 274
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 374 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 255
SSGL+ K +S + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 4.8
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 88 KRAAEKVSEARQAKSETPKAG--QGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG*GVAAK 261
K+ +++S+ +QAK ET K+G SS KL + S+ ++ S P
Sbjct: 311 KKRPKRLSKFKQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKI 370
Query: 262 IDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 366
++ E + Q EAV D L+ + D++
Sbjct: 371 VEEEPMLLPVPTTAQGQNVLEAVQYDGLDSLEDME 405
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 357 IHQIQDVFDDRLLLCLDHFVHLFDLNFGLGIDLGRNTLPWYPCAWL 220
+H I+D + LL HF+ +L++ + DL + PC +L
Sbjct: 28 LHAIEDSNESLYLLAYSHFL---NLDYNIVYDLLDRVISHVPCTYL 70
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 196 VKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMNK 303
V G+++ KPS +PG K + E + KI+E N+
Sbjct: 12 VFGTARIPKPSACLPGDFWKTKQEIEVQKKIDEFNQ 47
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 6.3
Identities = 22/106 (20%), Positives = 46/106 (43%)
Frame = +1
Query: 130 SETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMNKMV 309
S P S+++ S + V G+ + S + + + V ++ + +
Sbjct: 61 SSPPIVANDTVSNVRKPSDTKQVNGAGGQVNHSRAEDSDYATSDLSESSDVGDDDNSCIF 120
Query: 310 QTQKEAVIKDVLNLVYDIKPELHINYRLN*AKLLDLIHNLRLTNLI 447
K + KDV + IK E ++ +++ +D I NL+LTN++
Sbjct: 121 SFSKVPMQKDVAS----IKEEERLDPKISTLNNIDAIANLKLTNMV 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,572
Number of Sequences: 5004
Number of extensions: 31793
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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