Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30521
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820 32 0.22
03_02_0392 - 8070342-8071628 31 0.68
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 29 1.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 1.6
05_05_0188 + 23102802-23102884,23103956-23104658 29 2.7
10_08_0555 + 18738330-18738599 28 3.6
09_02_0065 + 3799748-3800182 28 3.6
03_02_0637 - 10009580-10009903,10013314-10014153 28 4.8
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58... 28 4.8
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 28 4.8
03_03_0271 - 16071281-16071493,16071521-16072003 27 6.3
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 27 8.4
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 27 8.4
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140... 27 8.4
>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
Length = 110
Score = 32.3 bits (70), Expect = 0.22
Identities = 28/105 (26%), Positives = 48/105 (45%)
Frame = +1
Query: 52 RPKVIQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPST 231
R IQQLLAAE+ A + V+ AR AKS + + + + + + S+
Sbjct: 6 RQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESS 65
Query: 232 WVPG*GVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 366
G V +++ ET KI ++ + + VI+ +L V +K
Sbjct: 66 GDSGANV-KRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109
>03_02_0392 - 8070342-8071628
Length = 428
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = +1
Query: 67 QQLLAAEKRAAEKVSEARQAKSETP--KAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVP 240
+Q + E+RA +V E + T K G GGG M+ +D V+ S+ L ++
Sbjct: 272 RQKRSGERRAEREVQEKDRNSRHTKQVKIGGGGGDKMRWLHSDIKVRVVSERLSKKLYLK 331
Query: 241 G*GVAAKIDAET-KVKIEEMNKMVQTQKEAVIKDVL 345
V + T + +++ +++VQ ++ +++ VL
Sbjct: 332 KGRVLDVVGPTTCDIIMDDQSELVQGVEQDMLETVL 367
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 115 ARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNL 219
+R+ ++TPK G GGGSS+ D G KNL
Sbjct: 340 SRKKAAQTPKGGGGGGSSLPPSGEDGG--GRKKNL 372
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +1
Query: 181 STDRSVKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMNKMVQTQKEAVIKD 339
S+ R+V+ + +L+ T+ G AAK++ + + +E +KMV + E+ +K+
Sbjct: 3054 SSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKMVLVEVESPVKN 3106
>05_05_0188 + 23102802-23102884,23103956-23104658
Length = 261
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 82 AEKRAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTW 234
A AA K +AR +TP+ GG+ + + GS + ++ W
Sbjct: 25 ASSSAARKKKQARAKNGDTPEPDAAGGARARASRRAKRGPGSYRGVRQRRW 75
>10_08_0555 + 18738330-18738599
Length = 89
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 82 AEKRAAEKVSEARQA--KSETPKA--GQGGGSSMKLKSTDRSVKGSSK 213
AEKRAA + AR A E KA G GGG S + + T GS K
Sbjct: 15 AEKRAAAAAAAARMAGGDGEDGKARGGGGGGDSRRTRWTAAWADGSEK 62
>09_02_0065 + 3799748-3800182
Length = 144
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 91 RAAEKVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSK 213
R ++ R+ K + K G+GGG + + RS KG K
Sbjct: 53 RGGGEIGRRRKRKRDWEKIGRGGGEIGRRRKRKRSGKGEKK 93
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 49 VRPKVIQQLLAAEKRAAEKVSEARQAKSETPKAGQGGGSSM 171
VRP+++++ AA + + +EAR+A + +P +G GS +
Sbjct: 87 VRPELLRRARAAWRGFFARPAEAREAYANSPATYEGYGSRL 127
>03_01_0071 +
580988-581134,581276-581359,581499-581573,581892-581973,
582078-582223,582337-582408,582765-582837,582933-582998,
583089-583123,583316-583387,583494-583622,583706-583813,
584062-584118,584323-584439,584530-584612,585345-585411,
585705-585776,585874-585924,586704-586763,586867-587016,
587107-587322
Length = 653
Score = 27.9 bits (59), Expect = 4.8
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Frame = +1
Query: 13 GLHSFCVFSIWRVRPKVIQQLLAAEKRA---AEKVSEARQAKSETPKAGQGGGSSMKLKS 183
G FC + I V P Q+LL E R+ ++ +A++ K E PK ++ S
Sbjct: 529 GFSRFCDYGIEGVVP---QELLPPEVRSKFYSKPGDKAKRPKREDPKGTSAQPKEQQVVS 585
Query: 184 TDRSVKGSSKNLKPSTW-VPG*GVAAKIDAETKVKIEEMNKMVQTQKEA 327
G +P VP A ID K EE++ Q EA
Sbjct: 586 ATPETDGGGSGAEPEEGAVPMDSDNAAIDEGRKQSPEEVSGPESGQCEA 634
>01_01_0937 -
7388230-7388283,7388957-7389091,7389201-7389365,
7389436-7389516,7389692-7389767,7389855-7389988,
7390082-7390174,7390885-7391018,7391125-7391533,
7392381-7392593
Length = 497
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 76 LAAEKRAAEKVSEARQAKSETPKAGQGGG 162
LAA +R++ S A A ++ P G+GGG
Sbjct: 5 LAASRRSSSSSSVAAAAAAKRPAVGEGGG 33
>03_03_0271 - 16071281-16071493,16071521-16072003
Length = 231
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 103 KVSEARQAKSETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVP 240
K+S A + ETP+ Q S+M L R + +S + S W P
Sbjct: 67 KLSVAHRVPEETPQKKQSKSSAMNLWKKIRGKEEASSSGSRSNWNP 112
>11_01_0553 -
4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 49 VRPKVIQQLLAAEKRAAEKVSEAR 120
+ P+++++LLAA KRA + EA+
Sbjct: 663 ILPEILEELLAARKRAKADLKEAK 686
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 133 ETPKAGQGGGSSMKLKSTDRSVKGSSKNLKPSTWVPG*GVAAKIDAETKVKIEEMN 300
+ PK+G GGG S KS G+ + P G G A+ + V + ++N
Sbjct: 49 KAPKSGGGGGGSPTAKSPLSKGAGNGEPPAPPAAAAGGGGGAEGETREDVFLRKLN 104
>05_01_0193 +
1400963-1401083,1401671-1401888,1401983-1402172,
1402391-1402782,1402971-1403381
Length = 443
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 142 KAGQGGGSSMKLKSTDRSVKGSSKNLKPS 228
KA GSS+K +D+S +G S N K S
Sbjct: 28 KASSQHGSSLKNSESDKSPRGHSNNKKSS 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,595,933
Number of Sequences: 37544
Number of extensions: 211293
Number of successful extensions: 700
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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