Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30521
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 255 RNTLPWYPCAWLQIL*TAFHAPVC 184
           R+ + +YPC W +I  T     +C
Sbjct: 480 RDMIGYYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 255 RNTLPWYPCAWLQIL*TAFHAPVC 184
           R+ + +YPC W +I  T     +C
Sbjct: 533 RDMIGYYPCCWWKICWTITTPAIC 556


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 283 KIEEMNKMVQTQKEAVIKDVLNLVYDIKPELH---INYRLN*AKLLDLIHNLRLTN 441
           +++ MN+M +   E ++   + L   I  + +   +N+R+  A + DLI N R  N
Sbjct: 530 RMDRMNRMNRQMNEYMMALSMKLQKFINNDYNFNEVNFRILGANVNDLIMNTRCAN 585


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 376 HINYRLN*AKLLDLIHNLRLTN 441
           H+N+++  A + DLI N R  N
Sbjct: 395 HVNFQILGANVNDLIRNSRCAN 416


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 206 LPFTLLSVLFNFILEPPPWPALGVSLF 126
           LPF +L+++  F+  P   PA   SLF
Sbjct: 386 LPFFVLALVRPFLKNPDAIPAFLSSLF 412


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 328 VIKDVLNLVYDIKPELHINYRLN*AKLL 411
           +I ++   +YDI PE+ +   L  AK+L
Sbjct: 565 LIDNIKKEIYDILPEVDVEEILGEAKVL 592


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +1

Query: 85  EKRAAEKVSEARQAKSETPKAGQGGGSSMK 174
           EK+  +++ E +++K++  +  + GG+  K
Sbjct: 212 EKKKEDEIDEGKESKTKLSQWRKDGGTVKK 241


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 400 AKLLDLIHNLRLTNLI 447
           AKLL L+  LRL+ L+
Sbjct: 211 AKLLSLVRLLRLSRLV 226


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 400 AKLLDLIHNLRLTNLI 447
           AKLL L+  LRL+ L+
Sbjct: 211 AKLLSLVRLLRLSRLV 226


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 400 AKLLDLIHNLRLTNLI 447
           AKLL L+  LRL+ L+
Sbjct: 211 AKLLSLVRLLRLSRLV 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,420
Number of Sequences: 438
Number of extensions: 2323
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)