Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30516
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    69   2e-12
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791...    30   1.1  
01_01_0043 - 321810-321973,322054-322846                               29   1.9  
01_01_0044 - 326337-326500,326618-327398                               29   2.5  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   3.3  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    28   5.7  
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890...    27   7.5  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/80 (40%), Positives = 54/80 (67%)
 Frame = +3

Query: 309 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAXRYSNVVINLVGRDYE 488
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI      SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 489 TKNFKYNDVHVDGVRRIARI 548
           T+N+ +++V+     ++A I
Sbjct: 61  TRNYGFDEVNHHMAEQLAMI 80


>12_01_0844 +
           7915121-7915225,7915724-7915777,7915888-7915968,
           7916164-7916209,7916311-7916405,7916581-7916613,
           7916941-7917286,7917372-7917511
          Length = 299

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 222 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 383
           GR+     VA V G +  +GR +   LGK G ++I+ Y     +A+  +VC ++
Sbjct: 3   GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 216 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 383
           +GG  +       V G TG++GR+V     ++G   T L+      D   AQ L    D 
Sbjct: 3   SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62

Query: 384 GQVLFTPYHLLDEESIAKAXRYSNVVINLV 473
           G  L     L D  S+ +A R ++VVI+ V
Sbjct: 63  GVTLLHG-DLHDHASLLRAVRDADVVISAV 91


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 216 TGGRSSFNGIVATVFGCTGFVGRYV---CNKLGKIGTQLILPYR-GDFYDAQRLKVCGDL 383
           +GG    + I+  V G TG++GR+V     +LG   T L+      D   +Q L+   D 
Sbjct: 3   SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60

Query: 384 GQVLFTPYHLLDEESIAKAXRYSNVVINLVG 476
           G  L     L D  S+  A R ++VVI+ +G
Sbjct: 61  GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 320 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 186
           + ++FS   A+  SDK    EN G   + ++ +  TS    KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 39  QLYKYELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 197
           Q  K +   YLSHK++ I L T    KL+ +  S+S V       + DR P+L
Sbjct: 112 QAPKMKTLGYLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162


>03_02_0499 -
           8908323-8908423,8908822-8908972,8909761-8909867,
           8909954-8910170,8910941-8911148,8911261-8911358
          Length = 293

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 222 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 368
           GR S +G +A V G T  +GR V  +L  +G  +    R +    +RLK
Sbjct: 14  GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,717
Number of Sequences: 37544
Number of extensions: 264351
Number of successful extensions: 553
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)