Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30515
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.93 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 307 TDFEVNDVSIVGFW*NVLYVPEVKEQFR-LRIHCLRGFINL 188
           T ++ +  S+ G W N   +PE+ E+FR LR+  LR    L
Sbjct: 334 TRYKDSSSSVEG-WENRATIPELNEEFRDLRLQDLRPLATL 373


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 356 LSRTFIGISFEFKCKNNFV 412
           L+R  +G +F+F+ KNN +
Sbjct: 386 LARDILGYNFDFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 356 LSRTFIGISFEFKCKNNFV 412
           L+R  +G +F+F+ KNN +
Sbjct: 386 LARDILGYNFDFQNKNNLI 404


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 44 LKPKPLW 64
          LKPKPLW
Sbjct: 41 LKPKPLW 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,419
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)