Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30514
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa...    26   6.5  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   8.6  

>SPBC1711.14 |rec15||meiotic recombination protein
           Rec15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 282 MQTRSLQQHRKSQNDLR*PCVIHAIVKKQLI 190
           MQ   +QQH+KSQ++    C+     K++++
Sbjct: 17  MQAEDMQQHQKSQSNQIASCLAEMNTKQEVV 47


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 15  YYSGP*MCITSTKTKCF*KLFFHCI*ISYVGETAK 119
           YY GP  C+  +        +  CI + Y G  AK
Sbjct: 37  YYDGPTCCVVGSSCIYSNPWYSQCIPVDYTGPCAK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,283
Number of Sequences: 5004
Number of extensions: 40295
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)