Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30514
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   1.5  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 HELHKVI*GRSVTYGVVVTTESACYMDITNKSKKPSCLP*FSNL 344
           H ++  + GRS+ + V V + +  +M  TN S    C P + N+
Sbjct: 257 HNMYSELVGRSMVHDVAVLSNTEMWMHKTNLSVTEICFPEYQNM 300


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 213 HELHKVI*GRSVTYGVVVTTESACYMDITNKSKKPSCLP*FSNL 344
           H ++  + GRS+ + V V + +  +M  TN S    C P + N+
Sbjct: 212 HNMYSELVGRSMVHDVAVLSNTEMWMHKTNLSVTEICFPEYQNM 255


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 27/36 (75%)
 Frame = +1

Query: 346  LHESRLVIKLLL*LAGTTESMLLILKI*LMPRYRKK 453
            +H+  L ++ ++ +A TT++++++LKI L+P Y K+
Sbjct: 1008 MHQYGLALEQIVRMAPTTQTIMILLKI-LLPYYGKQ 1042


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,521
Number of Sequences: 27780
Number of extensions: 225435
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)