Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30510
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical pr... 279 1e-75
Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 29 4.6
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 29 4.6
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 29 4.6
Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical pr... 28 8.0
>Z27080-1|CAA81600.1| 257|Caenorhabditis elegans Hypothetical
protein F55H2.2 protein.
Length = 257
Score = 279 bits (685), Expect = 1e-75
Identities = 132/199 (66%), Positives = 161/199 (80%)
Frame = +3
Query: 54 GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 233
GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5 GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64
Query: 234 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 413
KEAAFSLAEAKFT GDF+ V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L
Sbjct: 65 KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124
Query: 414 GLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLER 593
GL +GG +A+LKKN+ A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIPR+E
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIEN 184
Query: 594 TLAYIISRAGRA*A*EFYR 650
TL YI++ EF+R
Sbjct: 185 TLTYIVTELDEMEREEFFR 203
>Z99279-3|CAB16495.1| 298|Caenorhabditis elegans Hypothetical
protein Y57G11A.3 protein.
Length = 298
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 312 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLL 482
K IKI + ++ + +FE+ +D + ELA L G Q+L K+KK+F++
Sbjct: 21 KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFETGAVHN 80
Query: 483 VELASLQTSFVTLDEVIKIT 542
+E +T L+E K+T
Sbjct: 81 IENEDDETKIARLEERQKLT 100
>Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical
protein T16G12.4 protein.
Length = 213
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -2
Query: 577 MITCSMALTRLFVILITSSRVTNEVCSDANSTKSFTALWKFFLSF 443
+ITCS + +F++++ +T+ S+A ++ WK F F
Sbjct: 103 IITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWKVFKDF 147
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 81 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 239
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 87 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 81 SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 239
++G Q G LA K GL K++ + + F ++ K + TLM +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 333 SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELAS 497
SK+D V P ++ S Y+ + +RGG LA+ ++ +S +L+ AS
Sbjct: 980 SKRDFVQSSNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVLLSRAS 1034
>Z83129-2|CAB63327.1| 318|Caenorhabditis elegans Hypothetical
protein W06G6.3 protein.
Length = 318
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -2
Query: 337 LDLILI*ALVTFCSTTWLKSPVVNLASAKEKAASFITSPIRVLVSMILLKII 182
L +++ ++VTFC + W++ +V KEK A S +L++M L+K +
Sbjct: 181 LAFLMVTSVVTFCGSLWIRHFLVRF--LKEKTARL--SKTTILLNMQLVKAL 228
>Z81130-6|CAB03419.4| 312|Caenorhabditis elegans Hypothetical
protein T23G11.7b protein.
Length = 312
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 566 ARNHSPAGTYTRVHHLPSWTSLSVRVLPSQEDPGQEEDY 682
ARN+ P +Y+ +LPS T S P + P Q ED+
Sbjct: 222 ARNNIPPPSYSSTPNLPSHTPFSAP--PPRNQPQQYEDF 258
>Z70755-3|CAA94782.1| 475|Caenorhabditis elegans Hypothetical
protein K06A4.3 protein.
Length = 475
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 593 YTRVHHLPSWTSLSVRVLPSQE 658
Y + HHLP WT ++ RVL S E
Sbjct: 317 YLKQHHLPRWTQVT-RVLESAE 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,752
Number of Sequences: 27780
Number of extensions: 302403
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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