Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30509
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    27   1.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   2.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   4.2  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   5.6  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    24   9.7  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    24   9.7  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 412 NIYNSAHHVSEVTS*CCRPSLS 347
           N+YN+  H++E+T  C +P  S
Sbjct: 189 NMYNTKGHIAEITDGCWQPDSS 210


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 210 SLVNVGLPVACLQKL*LFHLMQYY 281
           S++++GLP++ LQ+  +  L+QY+
Sbjct: 132 SVLDIGLPMSALQRKMMHRLVQYF 155


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 191  MDQLFIVAC*RRPTSGLLTKALAFSSHAILQNGFNETVTL-YDLVRKVLMC 340
            +D   I      P+   L++ + F++    +NG +ETVT+ YDL+     C
Sbjct: 1218 LDNKIITESEAGPSRLELSRRILFNADVEKKNGKSETVTVHYDLLHNPASC 1268


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 251 ALAFSSHAILQNGFNETVTLYDL 319
           AL+F SH  L   +++T+ L+DL
Sbjct: 70  ALSFDSHYALSASWDKTIRLWDL 92


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 388 HGEQNYIYFNKVNVYEKKY 444
           H +++Y YFN +N   K+Y
Sbjct: 146 HRDKSYRYFNNINRLAKEY 164


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 27  KPLTLLHVKPSTDSSQNM 80
           KPL  LH++PS D   +M
Sbjct: 826 KPLPQLHIEPSRDEQYSM 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,277
Number of Sequences: 5004
Number of extensions: 34402
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)