Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30509
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0950 - 29090734-29091747                                         28   3.1  
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...    28   3.1  
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877...    27   5.5  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    27   7.3  
10_07_0110 + 12977702-12977958,12978374-12978527,12978661-129787...    27   9.6  

>03_05_0950 - 29090734-29091747
          Length = 337

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +2

Query: 119 WCYNFMHYLLPQYGTWXVKHVGHLMDQLFIVAC*RRPTSGLLTKALAFSSHAILQNGFNE 298
           W Y+     LP+     ++ V  L       A  R+P +G     LA  +HA  Q G  E
Sbjct: 71  WLYDAFQSNLPEIQLAVLRFVPALAGVYMSRAVSRKPLAGFEAVLLALYAHAAAQRGSGE 130

Query: 299 TVTL 310
             T+
Sbjct: 131 AETV 134


>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 150 LNTARGKSSTWDT*WINYLLSLVN----VGLPVACLQK 251
           LNT  G SS W T W  Y L LVN      LP++ ++K
Sbjct: 429 LNT--GSSSKWSTEWERYALPLVNQSPEYALPISFVRK 464


>06_03_0492 -
           21386587-21386700,21387471-21387599,21387715-21387790,
           21387898-21387950,21388034-21388095,21388164-21388274,
           21388361-21388527,21388804-21388869,21389416-21389505,
           21389592-21389740,21390182-21390316,21390399-21390454,
           21390630-21390663,21391908-21392018
          Length = 450

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +3

Query: 150 LNTARGKSSTWDT*WINYLLSLVN 221
           LNT  G SS W T W  Y L LVN
Sbjct: 391 LNT--GSSSKWSTEWERYALPLVN 412


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 102 AIHPVLFTCSANCPCSV*HEAMLRVFPF 19
           A   V   C   C C++  E ML++FP+
Sbjct: 497 AFKNVKILCQCPCQCNLLEEVMLKLFPY 524


>10_07_0110 +
           12977702-12977958,12978374-12978527,12978661-12978798,
           12978903-12979133,12979228-12979371,12979516-12979606,
           12979798-12979868,12980014-12980128,12980313-12980431,
           12980539-12980604,12980701-12980829,12980919-12981062,
           12981522-12981704
          Length = 613

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 84  TKLDVSQPWQSRGVIISCITCYLNTARGKSSTWDT*WINYLLSLVNV 224
           T +D+ +  Q+    +  I C       ++  WDT ++ YL  L N+
Sbjct: 558 TSIDIVKLRQNSEAHLQAICCKKEVKNIQAICWDTQFVEYLFHLTNL 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,030,122
Number of Sequences: 37544
Number of extensions: 206422
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)