Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30509
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57166| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-25)                 29   1.8  
SB_45817| Best HMM Match : Ank (HMM E-Value=0)                         28   4.3  
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)        28   4.3  
SB_34331| Best HMM Match : Transposase_21 (HMM E-Value=0.00032)        28   4.3  
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_57166| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-25)
          Length = 382

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 ALAKSWCYNFMHYLLPQYGTWXVKHVGH 187
           ALA  WC N ++Y L  +G W + +  H
Sbjct: 265 ALAVCWCPNQVYYALYNFGAWELNNNVH 292


>SB_45817| Best HMM Match : Ank (HMM E-Value=0)
          Length = 417

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 20  KGKTLNIASC*TEHGQFAEHVNKTGCIAALAKSWCYNFMHYLLPQYGTWXVKHVGHLMDQ 199
           KG T  +     EH    EH NK GC   +  +    F   +L   GT+      +L+D 
Sbjct: 312 KGHT-KVVELLLEHKSNIEHRNKAGCTPLMLAARAMRFRVAILTVLGTYNDGRNANLIDM 370

Query: 200 LF 205
            F
Sbjct: 371 NF 372


>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
          Length = 290

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 132 SCITCYLNTARGKSSTWDT 188
           +C+ C  + A GKS TWDT
Sbjct: 28  NCVHCKKSFAPGKSKTWDT 46


>SB_34331| Best HMM Match : Transposase_21 (HMM E-Value=0.00032)
          Length = 276

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 132 SCITCYLNTARGKSSTWDT 188
           +C+ C  + A GKS TWDT
Sbjct: 28  NCVHCKKSFAPGKSKTWDT 46


>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 193 GSTIYCRLLTSAYQWLAYKSSSFFISCNITKRF 291
           G  ++C LL  A   +AY S +F + C  T+ F
Sbjct: 266 GKQVHCFLLILAILMMAYTSMTFPVLCPYTEGF 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,231
Number of Sequences: 59808
Number of extensions: 253179
Number of successful extensions: 412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)