Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30503
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.3  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   4.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 94  VPMVRAATSDKPISPQNS 41
           +PM ++ TSD P S QNS
Sbjct: 220 LPMWKSDTSDGPESHQNS 237


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 149 AGLANHTISNNSYLQSL 99
           + L+N+TI NN+Y + L
Sbjct: 316 SSLSNNTIHNNNYNKKL 332


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 RPACYMYTLEMNFLK 186
           RPA +  TLEM +L+
Sbjct: 387 RPATFQDTLEMKYLE 401


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 82  SSLSNNTIHNNNY 94


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 82  SSLSNNTIHNNNY 94


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 83  SSLSNNTIHNNNY 95


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 83  SSLSNNTIHNNNY 95


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 83  SSLSNNTIHNNNY 95


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 149 AGLANHTISNNSY 111
           + L+N+TI NN+Y
Sbjct: 83  SSLSNNTIHNNNY 95


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 10  SSVYTIEF*NVNFVVILVYRMSR 78
           S V TI   NVNF   + +RM+R
Sbjct: 313 SVVVTIAVLNVNFRSPVTHRMAR 335


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 122 WRWYGWQDLLAIC 160
           W+ Y WQ  L IC
Sbjct: 95  WQQYPWQWGLGIC 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,867
Number of Sequences: 438
Number of extensions: 2780
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)