Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30502
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 29 0.81
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 1.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.5
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 25 7.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 7.5
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 7.5
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 7.5
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 9.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 9.9
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 574 ASQKQVLVPIRLDMEI-EGQKLRDTF 648
A ++ V +PIRLD+E+ +L+DTF
Sbjct: 111 AEERDVYIPIRLDIELPNNYRLKDTF 136
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 592 LVPIRLDMEIEGQKLRDTF 648
LVPIRL+++ + KLRD+F
Sbjct: 141 LVPIRLEIDADRYKLRDSF 159
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -3
Query: 660 YSHVKCIPEFLTLNLHVQSNRYKHLLLRSILQHCSHVCVIETQWECSHLLIMHSTPADWS 481
Y+ +C E NLH N KH+LL L H V++ W S +++ S +
Sbjct: 997 YAEYRCQWEGCLANLHSLENFIKHVLL---LHHPKSCSVVKCLW-ASCDMVLPSEEFEMH 1052
Query: 480 SLGHSIQMR 454
GH +R
Sbjct: 1053 LRGHLNNIR 1061
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 367 SVSQELATPRESKSKKPHTPSWLPVMPN 450
S +Q+++ +++ S K P+ LP++PN
Sbjct: 115 SSNQDISNDQKAPSFKEQEPATLPILPN 142
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 430 WLPVMPNSSHLDAVPQATPISRSRVH 507
W P N+ + ++ ATPI R+H
Sbjct: 684 WKPAQLNNDSISSMALATPIGAIRIH 709
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 235 TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 414
T EE RL+ NGL K EV+ + D AVS + + + K K+
Sbjct: 133 TLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEKVEKMKR 192
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 418 HTPSWLPVMPNSSHLDAVPQATPISRSRVHNKK 516
H+P+ L V+ N S L A + ISRS+ ++K
Sbjct: 77 HSPTSLCVLENGSVLTANYNSASISRSKAKDEK 109
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 352 KYKAVSVSQELATPRESKSKKPHTPSWLPVMP 447
K ++ + QEL+TP++ +P PS P+ P
Sbjct: 26 KDDSIVLEQELSTPKQVNQARPKFPS--PITP 55
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 161 SEPTQ*KSPPSSI*KLIGLSPYV 93
S P + +SP + + K+IG SPYV
Sbjct: 348 SSPEKKESPATHLLKVIGSSPYV 370
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 400 SKSKKPHTPSWLPVMPNSSHLDAVPQATPIS 492
SK K+ P PV + H DA P+A PIS
Sbjct: 742 SKKKQTEIP---PVSSSPPHNDAPPKAKPIS 769
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,702
Number of Sequences: 5004
Number of extensions: 61203
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -