Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30502
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 31 1.1
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 30 1.9
03_06_0579 + 34870958-34874578 29 3.4
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 28 5.9
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 28 7.8
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 28 7.8
06_01_1134 + 9374328-9374522,9375226-9375326,9375706-9376336,937... 28 7.8
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 28 7.8
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333... 28 7.8
01_01_0261 + 2119519-2121033 28 7.8
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 364 VSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKV 519
+S +Q L + R++ S P + + PNSS + + QATP + S +H+KK+
Sbjct: 534 LSDNQGLCSSRKNNSCIAIMPKPIVLNPNSS-TNPLSQATPTAPSSMHHKKI 584
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 385 ATPRE-SKSKKPHTPSWLPVMPNSSHLDAVPQATP 486
A P + S++ +P PS L PN+S LD PQA P
Sbjct: 216 ANPTQASQATQPAAPSILSSGPNASPLDLFPQALP 250
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 463 DAVPQATPISRSRVHNKKVRTFPLCFDDTD-MTAMLENASQKQVLVPIRLDMEIEG 627
D +P P+S+S+V L FD+ D T +LE K+ L ++ +M+IEG
Sbjct: 859 DQLPPFKPLSKSQVAKLSKEQQKLYFDEYDYRTKLLEKKQLKEQLRRLK-EMKIEG 913
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = -2
Query: 301 KLNWTAHEDQDRCQLIAYVLHW*GYAGTCQGTSCRVTHGTSAGNSRPLSQHNKSLLL 131
K W ++YV W G CR T T SR L+Q + SL L
Sbjct: 283 KKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIKAISRSLNQRHSSLHL 339
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 433 LPVMPNSSH--LDAVPQATPISRSRVHNKKVRTFPLC 537
LPV P+SSH LDA P TP S + +++ R +C
Sbjct: 5 LPVSPSSSHHLLDAAP--TPASPAHAQHRRRRRRRMC 39
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +1
Query: 481 TPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIRLDME 618
T ++++ +NK+V+ +CFD T + +N S KQ++ I + +E
Sbjct: 445 TTVAQAVFNNKRVK---MCFDLTAWVYVSDNISGKQIIQRIIMSLE 487
>06_01_1134 +
9374328-9374522,9375226-9375326,9375706-9376336,
9376426-9376599,9376739-9376804,9376887-9376955,
9377054-9377125,9377207-9377398,9378114-9378200
Length = 528
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 353 NTKQCPSAKNWRHPVRAKARSHTLHHGCQSCQTLLIWMLCPRLLQSAGVE 502
+TKQ W P+R K + L GC SC LI C R S+G E
Sbjct: 59 DTKQKEDVGLWIRPLRGKEKVRVLGGGC-SCGRPLI-SPCDRRFWSSGSE 106
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 630 LTLNLHVQSNRYKHLLLRSILQH 562
L++++H + NR KH+ +R L H
Sbjct: 62 LSMDMHSKKNRKKHITMRGFLMH 84
>01_05_0027 -
17331888-17331968,17332236-17332806,17333190-17333335,
17333412-17333459
Length = 281
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 406 SKKPHTPSWLPVMPNSSHLDAVPQATPISRSRV 504
SK+P TP PV P+ + P P+S SRV
Sbjct: 51 SKQPRTPGGQPVGPSRQRMPTAPLLRPLS-SRV 82
>01_01_0261 + 2119519-2121033
Length = 504
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 552 HDCNAGECFAKAGACTDSIGHGD*GSKTQG 641
HD +A C GAC + +GD GS T G
Sbjct: 228 HDLDAAACRNSTGACLYEVAYGD-GSYTVG 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,107
Number of Sequences: 37544
Number of extensions: 410692
Number of successful extensions: 1160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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