Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30502
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)              224   6e-59
SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 31   1.1  
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 31   1.1  
SB_57815| Best HMM Match : Ribosomal_L35p (HMM E-Value=6.5)            29   2.6  
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   2.6  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  29   2.6  
SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)                   28   6.0  
SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6)                    28   6.0  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)                  28   7.9  
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  28   7.9  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  224 bits (547), Expect = 6e-59
 Identities = 107/194 (55%), Positives = 143/194 (73%), Gaps = 3/194 (1%)
 Frame = +1

Query: 76  TKMALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKR 255
           +KMA+RTYG KP SFQ+E+GG+FY +GSEVGN+LR+FRGSLYKKYP + RR  T +ERK+
Sbjct: 198 SKMAVRTYGQKPKSFQLEDGGEFYMIGSEVGNFLRMFRGSLYKKYPSLWRRLATLDERKK 257

Query: 256 LIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTPSWL 435
           ++  G G +         +A EVE+I+EGNDDKYK    +QE +    S   K  + +W 
Sbjct: 258 IVSLGFGHNNLATNVTLLRALEVEEILEGNDDKYKISLEAQESSRQAASGKSKRSSTAWT 317

Query: 436 P--VMPNSS-HLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLENASQKQVLVPIR 606
           P  + P+SS HLDAVP +TP++R+R+  K++RTFP C+DD DM A+ E A+Q +VLVPIR
Sbjct: 318 PQTLFPSSSFHLDAVPCSTPVNRNRLGPKRIRTFPTCYDDHDMGAIHEAAAQPEVLVPIR 377

Query: 607 LDMEIEGQKLRDTF 648
           LD++IEGQKLRDTF
Sbjct: 378 LDVDIEGQKLRDTF 391



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
 Frame = +1

Query: 100 GDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNGLG- 276
           G KP  FQ+E  G+FY +GSEVG+YL L +G+LYK++P + RR  T EERK ++   +G 
Sbjct: 13  GKKPEIFQLEPTGEFYMIGSEVGHYLGLMKGALYKRFPSLWRRIPTLEERKIILSLDIGY 72

Query: 277 PHXXXXXXXXXKASEVEDIIEGNDDKYK 360
                      KASEV++II+G   KY+
Sbjct: 73  TSLSNSNIMLVKASEVDEIIKGAGTKYR 100


>SB_11512| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 639

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +1

Query: 235 TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 414
           ++E++   +++GL              S  E  I+G+D +    ++   +ATPR ++   
Sbjct: 519 SSEQQHPAVEDGLDESKGLEEESVHGVSSDEITIKGSDAETAVDTLQTPIATPRSARPPS 578

Query: 415 PHTPSWLPVMPNSSHLDAVPQATPISRSRVHN 510
             +P      P   HL + P+  P  R   H+
Sbjct: 579 -DSPRPARPQPEPRHLRSPPEPKPRHRDSSHD 609


>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +1

Query: 235  TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 414
            ++E++   +++GL              S  E  I+G+D +    ++   +ATPR ++   
Sbjct: 2538 SSEQQHPAVEDGLDESKGLEEESVHGVSSDEITIKGSDAETAVDTLQTPIATPRSARPPS 2597

Query: 415  PHTPSWLPVMPNSSHLDAVPQATPISRSRVHN 510
              +P      P   HL + P+  P  R   H+
Sbjct: 2598 -DSPRPARPQPEPRHLRSPPEPKPRHRDSSHD 2628


>SB_57815| Best HMM Match : Ribosomal_L35p (HMM E-Value=6.5)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +1

Query: 322 VEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTPSW---LPVMPNSSHLDAVPQ---AT 483
           + ++I  + +K+K    SQ  +  ++ K K+P   SW   LP   N +H   +P    +T
Sbjct: 17  ITELIRRSGEKFKRGRASQHSSPQKKKKEKRP--LSWDRTLPEKQNGNHTYGLPNRYGST 74

Query: 484 PISRSRVHNKK 516
            + R  V N K
Sbjct: 75  RLLRKNVKNPK 85


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 18  INITILEVNVIILSKEQHNYKNGLTYVRR 104
           +NITI+   VII+  + H+Y + L + RR
Sbjct: 214 VNITIITTTVIIVKHDHHHYHHHLCHDRR 242


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
 Frame = +1

Query: 337 EGNDDKYKAVSVSQELATPRESKSKKPHTP---SWLPVMPNSSHLDAVPQATPISRSRVH 507
           +G  DK  AV  ++   +P+E +    HTP     LPV  +S+H+    +   +     H
Sbjct: 652 KGQRDKTMAVKSTKTQTSPQEYRESPLHTPLPRKRLPVPISSTHIAPPTERVALGH---H 708

Query: 508 NKKVRTFPLCFDDTDMTAMLENASQKQVLVPIRLDMEIEGQKLRDTFYMGIKM 666
           +K+V      FDD D     ++  + +    I  ++  + +K+ DT++  + M
Sbjct: 709 DKRVH-----FDDDDHWRARDDERKTRKARDIIEELLGKRRKVPDTWHTPLGM 756


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 121 ENLSAYRRTYVRPFL*LCCSFDKIITL 41
           +N+SA RR + R FL L C   ++ITL
Sbjct: 335 DNVSAVRREFSRAFLLLICCSSRVITL 361


>SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 373 SQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSR 501
           SQ+      + S   HTP   P  P +S +  +P  TP S S+
Sbjct: 30  SQDELLLTSAASSPSHTPPGTPTTPTTSTVSFLPSTTPSSSSQ 72


>SB_48933| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
          Length = 611

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 379 ELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCF 540
           E+ATP++ ++ +P TP  +P M     +    Q   I         +   P CF
Sbjct: 97  EIATPQQPETIQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECF 150


>SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6)
          Length = 542

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 379 ELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCF 540
           E+ATP++ ++ +P TP  +P M     +    Q   I         +   P CF
Sbjct: 28  EIATPQQPETIQPETPKDIPSMAPVPEIATSQQPETIQPDEPEQPGIHLKPECF 81


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +1

Query: 553  MTAMLENASQKQVLVPIRLDMEIEGQKL 636
            +T M  + S+K++LVP +L++E+  QK+
Sbjct: 1523 ITKMQRSDSKKKLLVPTKLEVEVSEQKI 1550


>SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24)
          Length = 324

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 85  ALRTYGDKPISFQIEEGGD--FYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRL 258
           +LR   DK   ++    GD  +Y + S++ ++L +   SL +K+P +    L  +E+  L
Sbjct: 151 SLRNILDKLHEYKWPADGDGQYYYLTSQIAHFLGI--ESLQEKHPKIEFHVLQEDEKSFL 208

Query: 259 IDNG 270
           ++NG
Sbjct: 209 LENG 212


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 325 EDIIEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATP 486
           +D    +D       V QE  TP   K +KP T + + + P+ +   + P   P
Sbjct: 245 QDPAPADDTASATEDVPQEEPTPESPKEEKPRTWAAMVIQPSPTPAGSAPVVKP 298


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 433  LPVMPNSSHLDAVPQATPISRSRVHNKKVRTFPL 534
            +PV P+  H+D   Q+ P+S   + N+ V   P+
Sbjct: 2373 VPVRPSPPHVDGFSQSPPMSTLNMSNRPVSMSPV 2406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,076,052
Number of Sequences: 59808
Number of extensions: 494706
Number of successful extensions: 1353
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)